View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_13 (Length: 544)
Name: NF15745_low_13
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Complemental strand, 244958 - 244441
Alignment:
| Q |
20 |
gccatatttgcggttatgatgtgattaattggcaatttaaaataatgatttttggtgttggtggaattgaaaaatgtatttgtggataagaagtaatagg |
119 |
Q |
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| T |
244958 |
gccatatttgcggttatgatgtgattaattggcaatttaaaataatgatttttggtgttggtggaattgaaaaatgtatttgtggataagaagtaatagg |
244859 |
T |
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| Q |
120 |
acagagcactacatacacaaataagaaaagaggatcaaaatttgaatagagcaaaccatggatcacacattttattaatttcaacatttgatcattatac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244858 |
acagagcactacatacacaaataagaaaagaggatcaaaatttgaatagagcaaaccatggatcacacattttattaatttcaacatttgatcattatac |
244759 |
T |
|
| Q |
220 |
ttgatgatgatcactacatgcgatggaaagaacttaatacagcactaattgaacttgctagacattaatata-nnnnnnnnnacaagattgctagacatt |
318 |
Q |
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| T |
244758 |
ttgatgatgatcactacatgcgatggaaagaacttaatacagcactaattgaacttgctagacattaatatatatattttttacaagattgctagacatt |
244659 |
T |
|
| Q |
319 |
aatatgtaccctagtaatgagaaattaataaaacattaccatatccatatatatagctagttatttatgaagtttacgttaattttgatagagataatca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
244658 |
aatatgtaccctagtaatgagaaattaataaaacattaccatatcc----atatagctagctatttatgaagtttacgttaattttgatagagataatca |
244563 |
T |
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| Q |
419 |
gatgcaagattcagacgaacttcagattatcagaacaccttttctctttnnnnnnngataattaaaagttgtttaagacaatcattatggaagggctaag |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
244562 |
gatgcaagattcagacgaacttcagattatcagaacaccttttctctttaaaaaaagataattaaaagttgtttaagacaatcattctagaagggctaag |
244463 |
T |
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| Q |
519 |
aagatgttaagaagaacgagaa |
540 |
Q |
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|||||| ||||||||||||||| |
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| T |
244462 |
aagatgataagaagaacgagaa |
244441 |
T |
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