View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_131 (Length: 216)
Name: NF15745_low_131
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_131 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 30292825 - 30293008
Alignment:
| Q |
19 |
aatacaggccaaaggaacaacaacaatccaccacttggtgaccaaaacaagaagcaccattaggacaaccaaccgaagcttcacgcagacaaagctgcca |
118 |
Q |
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| T |
30292825 |
aatacaggccaaaggaacaacaacaatccaccacttggtgaccaaaacaagaagcaccattaggacaaccaaccgaagcttcacgcagacaaagctgcca |
30292924 |
T |
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| Q |
119 |
aagatg-caaaagcctgaaaccatagcagaacaactcactatcaaagcagccaaatgattaaaccgttggcaaagaaaagatgt |
201 |
Q |
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| T |
30292925 |
aagatgccaaaagcctgaaaccatagcagaacaactcactatcaaagcagccaaatgattaaaccgtaggcaaagaaaagatgt |
30293008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 30287660 - 30287712
Alignment:
| Q |
25 |
ggccaaaggaacaacaacaatccaccacttggtgaccaaaacaagaagcacca |
77 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287660 |
ggccaaagccacaacaacaatccaccacttggtgaccaaaacaagaagcacca |
30287712 |
T |
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