View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_15 (Length: 519)
Name: NF15745_low_15
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Complemental strand, 34055052 - 34054566
Alignment:
| Q |
19 |
acagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggctgtcggacaacagtta |
118 |
Q |
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| T |
34055052 |
acagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggctgtcggacaacagtta |
34054953 |
T |
|
| Q |
119 |
tagccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctggatgaaattattttgaggcaacttacataac |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34054952 |
taaccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctggatgaaattatc--gaggcaacttacataac |
34054855 |
T |
|
| Q |
219 |
tggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagagagatttaggaagaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054854 |
tggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagagagatttaggaagaga |
34054755 |
T |
|
| Q |
319 |
gttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgactctgttatagtggat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054754 |
gttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgactctgttatagtggat |
34054655 |
T |
|
| Q |
419 |
gctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctatgtaatatggctgcctttg |
507 |
Q |
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| T |
34054654 |
gctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctgtgtaatatggctgcctttg |
34054566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 107 - 366
Target Start/End: Original strand, 47383029 - 47383293
Alignment:
| Q |
107 |
ggacaacagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaattatt---ttg |
202 |
Q |
| |
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||||| |||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
47383029 |
ggacagcagttataaccgaatcaaaagcttggtgaccgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatgattgttttc |
47383128 |
T |
|
| Q |
203 |
aggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacag |
301 |
Q |
| |
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|||||||||||| ||||||| |||||| |||||| | ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||| |
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| T |
47383129 |
aggcaacttacaaaactggaggttaaggagatagctgatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacag |
47383228 |
T |
|
| Q |
302 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
366 |
Q |
| |
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| T |
47383229 |
agagatttagggagagagtggtcgacgaaggttataatcctagttatggtgccagacctctaaga |
47383293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 47818005 - 47818366
Alignment:
| Q |
21 |
agtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtg-tgattgtgaa-aggaggctgtcggacaacagt |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| | || | | |||||||||| |
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| T |
47818005 |
agtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgctgaccttgactatgatga-gaaggacaacagt |
47818103 |
T |
|
| Q |
117 |
tatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaa---attattttgaggcaactta |
212 |
Q |
| |
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|||| || |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
47818104 |
tataaccgaatcaaaagcttggtgatcgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatgattgttttcaggcaactta |
47818203 |
T |
|
| Q |
213 |
cataactggatgtta-------agtagatagtttgtataa-tgctgaaggaagtgtcagagaaactgaaagtc-gagagattgagctttcggtgacagag |
303 |
Q |
| |
|
|| ||||||| | || || |||||| | ||||| |||| ||||| |||| |||| ||||||| | ||||||||||||||| ||||||||| |
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| T |
47818204 |
caaaactggaggctaaggagttaggagatagctgatataattgcttaaggaggtgttcgagagactgaaaaccaaagagattgagctttcagtgacagag |
47818303 |
T |
|
| Q |
304 |
agatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
366 |
Q |
| |
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||||||||| ||||||| ||||| |||||||| |||||| ||||||| |||||||||||||| |
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| T |
47818304 |
agatttagggagagagtggtcgatgaaggttataatcctaattatggtgccagacctctaaga |
47818366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 47383348 - 47383442
Alignment:
| Q |
386 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
47383348 |
gagattaaagagggtgactctgttatagtggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgcc |
47383442 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 47818421 - 47818513
Alignment:
| Q |
386 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
480 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |
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| T |
47818421 |
gagattaaagagggcgactct--tatagtggatgctgattctgatggaaatgtgattgtgctcaatggtagtagtggtgctgcaaattcattgcc |
47818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 47382910 - 47382992
Alignment:
| Q |
21 |
agtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggagg |
101 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47382910 |
agtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgattgagaaaggagg |
47382992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 45115869 - 45115942
Alignment:
| Q |
31 |
gaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggc |
102 |
Q |
| |
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||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
45115869 |
gaactgtggatttcaagaacacacttcttataatgacgtcaaatgttggaagcagtgtgattgagaaaggaggc |
45115942 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 455
Target Start/End: Original strand, 45116297 - 45116366
Alignment:
| Q |
386 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggta |
455 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| |||||| || || ||||| ||||| |||||||||| |
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| T |
45116297 |
gagatcaaagagggtgactccgtaatagtggatgttgattccgagggtaatgtgattgttctcaatggta |
45116366 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 107 - 366
Target Start/End: Original strand, 40245743 - 40246007
Alignment:
| Q |
107 |
ggacaacagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaattatt---ttg |
202 |
Q |
| |
|
||||| |||||||| | |||||| ||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||| ||| || |
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| T |
40245743 |
ggacagcagttataacagaatcaagagcttggtgaccgaagagctgaaacaatactttaggccagagttcttgaataggcttgatgaaatgattgttttc |
40245842 |
T |
|
| Q |
203 |
aggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacag |
301 |
Q |
| |
|
|||||||| || ||||||| |||||| |||||| ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||| |
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|
| T |
40245843 |
aggcaactcactaaactggaggttaaggagatagcagatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacag |
40245942 |
T |
|
| Q |
302 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
366 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| ||||||||||||| |||| ||||||||| |
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|
| T |
40245943 |
agagatttagggagagagtggtcgacgaaggttataatcctagttatggggccaggcctctaaga |
40246007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 383 - 480
Target Start/End: Original strand, 40246059 - 40246156
Alignment:
| Q |
383 |
agggagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
480 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
40246059 |
agggagattaaagagggcgactctgttatagtggatgctgattctgatggaaacgtgattgtactcaacggtagtactggtgctccagattcattgcc |
40246156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 40245624 - 40245712
Alignment:
| Q |
21 |
agtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggctgtcg |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |
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|
| T |
40245624 |
agtaagggaagaactgtggacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgatcgagaaaggaggccgtcg |
40245712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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