View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_16 (Length: 514)
Name: NF15745_low_16
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 38023769 - 38024255
Alignment:
| Q |
18 |
aaagtaagtcaaacaaatgtacctcattcttatgcaccccagcttcaaaccttgctcatgcttagccatgtacatatcagctgcaatatctgcagatttt |
117 |
Q |
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| T |
38023769 |
aaagtaagtcaaacaaatgtacctcattcttatgcaccccagcttcaaaccttgctcatgcttagccatgtacatatcagctgcaatatctgcagatttt |
38023868 |
T |
|
| Q |
118 |
ttcagttttaatttattctgagtataaacaaatttaaaccagacttgcgttgttaataacattaattgttgtaatgaaatcatcgttgcagctgagaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38023869 |
ttcagttttaatttattctgagtataaacaaatttaaaccaggcttgcgttgttaataacattaattgttgtaatgaaatcatcgttgcagctgagaaga |
38023968 |
T |
|
| Q |
218 |
ttggattgacatcaatccaaccattttacgctcaaaatggatctctgaatgagattcttggtggtctcaactttggatcaacacaagctacaatcatgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38023969 |
ttggattgacatcaatccaaccattttacgctcaaaatggatctctgaatgagattcttggtggtctcaactttggatcaacacaagctacaatcatgaa |
38024068 |
T |
|
| Q |
318 |
ccagggaggcttcagccaccagtctctaaaccaacaactacgccaagtctctgagagcatgcagctactgcaactgcagctaagcgaaaaagctgctctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024069 |
ccagggaggcttcagccaccagtctctaaaccaacaactacgccaagtctctgagagcatgcagctactgcaactgcagctaagcgaaaaagctgctctt |
38024168 |
T |
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| Q |
418 |
gaatttacaaaatcttccatctttttcctctcatttggaaaagaagattacattgatttattcctacacaactcttccaaccctatg |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024169 |
gaatttacaaaatcttccatctttttcctctcatttggaaaagaagattacattgatttattcctacacaactcttccaaccctatg |
38024255 |
T |
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