View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_18 (Length: 506)
Name: NF15745_low_18
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 496
Target Start/End: Original strand, 10462740 - 10463227
Alignment:
| Q |
9 |
gaacaaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaag |
108 |
Q |
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| T |
10462740 |
gaacaaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaag |
10462839 |
T |
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| Q |
109 |
attgattgaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgtt |
208 |
Q |
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| T |
10462840 |
attgattgaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgtt |
10462939 |
T |
|
| Q |
209 |
gaattagttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcat |
308 |
Q |
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| T |
10462940 |
gaattagttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcat |
10463039 |
T |
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| Q |
309 |
gtgactcacatgcacagcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattannnnnnnaacaattagtaagcaa |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10463040 |
gtgactcacatgcacagcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattatttttttaacaattagtaagcaa |
10463139 |
T |
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| Q |
409 |
aacaagacaatcattacttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatccgtaaagtttggta |
496 |
Q |
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| T |
10463140 |
aacaagacaatcattacttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatccgtaaggttaggta |
10463227 |
T |
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