View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_20 (Length: 506)
Name: NF15745_low_20
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_20 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 36283778 - 36284108
Alignment:
| Q |
17 |
aaatttgagactatatatcatcttctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatacta |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
36283778 |
aaatctgagactatatatcatcttctggcaattctcttatatccaaataacaaggacaccaatgatgatagttataaaagtaataataacaatgatacta |
36283877 |
T |
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| Q |
117 |
atgagaattaattggattttatagagaggtagagtaatgtgcattcatacctgaattattgtgcaggctgattgcgataataacattcaatgaaattagt |
216 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | | ||||||| |
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| T |
36283878 |
atgagaattaactggatttcatagagaggtagagtaatgtgcattcatacctgaattattgtgcaggctgattgtgataataatatttattcaaattagc |
36283977 |
T |
|
| Q |
217 |
acttttagtaagcaatttccaactagatatggatctattaaaaaaggatcaaagagtgacaaaggctgctgctcaagtaccaaacaattgttgagcaatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36283978 |
acttttagtaagcaatttccaactagatatggatctatt-aaaaaggatcaaagagtgacaaaggctgctgctcaagtaccaaacaattgttgagaaatt |
36284076 |
T |
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| Q |
317 |
tattaaaactattaatagaggcttatagattt |
348 |
Q |
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|||||||||||| ||||||||||||||||||| |
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| T |
36284077 |
tattaaaactatgaatagaggcttatagattt |
36284108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 11098544 - 11098418
Alignment:
| Q |
17 |
aaatttgagactatatatcatcttctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatacta |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11098544 |
aaatctgagactatatatcatcttctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatacta |
11098445 |
T |
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| Q |
117 |
atgagaattaattggattttatagaga |
143 |
Q |
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| T |
11098444 |
atgagaattaactggattttatagaga |
11098418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 17998785 - 17998911
Alignment:
| Q |
17 |
aaatttgagactatatatcatcttctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatacta |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17998785 |
aaatctgagactatatatcatcttctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatacta |
17998884 |
T |
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| Q |
117 |
atgagaattaattggattttatagaga |
143 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
17998885 |
atgagaattaactggattttatagaga |
17998911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 40571712 - 40571794
Alignment:
| Q |
266 |
caaagagtgacaaaggctgctgctcaagtaccaaacaattgttgagcaatttattaaaactattaatagaggcttatagattt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40571712 |
caaagagtgacaaaggctgctgctcaagtaccaaacaattattgagaaatttattaaaactattaatagaggcttatagattt |
40571794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 19913218 - 19913300
Alignment:
| Q |
266 |
caaagagtgacaaaggctgctgctcaagtaccaaacaattgttgagcaatttattaaaactattaatagaggcttatagattt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19913218 |
caaagagtgacaaaggctgctgctcaagtaccaaacaattattgagaaatttattaaaactattaatagaggcttatagattt |
19913300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 18251 - 18343
Alignment:
| Q |
256 |
aaaaaaggatcaaagagtgacaaaggctgctgctcaagtaccaaacaattgttgagcaatttattaaaactattaatagaggcttatagattt |
348 |
Q |
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||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
18251 |
aaaaaaggaacaaagagtgaaaaaggcgactgctcaagtaccaaacaattgttgagcaattcattaaaactagtaatagaggcttatagattt |
18343 |
T |
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