View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_24 (Length: 480)
Name: NF15745_low_24
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_24 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 27783295 - 27783693
Alignment:
| Q |
11 |
aattctattacaataaaaaacggccaaagatgagatgtacctcaattttcaacttctctagttcctgatgattatcacgaaagagtgaaagtgcagtcct |
110 |
Q |
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| T |
27783295 |
aattctattacaataaaaaacggccaaagatgagatgtacctcaattttcaacttctctagttcctgatgattatcacgaaagagtgaaagtgcagtcct |
27783394 |
T |
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| Q |
111 |
gttaagagagaaaattggaattctctttgaacacagaaattcaaagtcaagaaaattatcttccttaagttcagctgaagaaacaaaatcagcttgaaca |
210 |
Q |
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| T |
27783395 |
gttaagagagaaaattggaattctctttgaacacagaaattcaaagtcaagaaaattaccttccttgagttcagctgaagaaacaaaatcagcttgaaca |
27783494 |
T |
|
| Q |
211 |
ttggaagaagcggccttaaacgttacaattgtaaaatctgaactagattcttcatcaaatttccaagaaacatcaataccatcgttccaaacaatttctt |
310 |
Q |
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| T |
27783495 |
ttggaagaagtggccttaaacgctacaattgtaaaatctgaactagattcttcatcaactttccaagaaacatcaataccatcgttccaaatgatatctt |
27783594 |
T |
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| Q |
311 |
cattatcagatgagagagcagtccatgatttacaaaggatactagaacttgttacaaacgatgcaagctcaactccactgctaaatctgcaagaaaaag |
409 |
Q |
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| T |
27783595 |
cgttattagatgagatagaagtccatgatttacaaaggatactagaacttgttacaaaagatgcaagttcgattccactgctaaatctgcaagaaaaag |
27783693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 39 - 441
Target Start/End: Original strand, 27787272 - 27787671
Alignment:
| Q |
39 |
gatgagatgtacctcaattttcaacttctctagttcctgatgattatcacgaaagagtgaaagtgcagtcctgttaagagagaaaattggaattctcttt |
138 |
Q |
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| T |
27787272 |
gatgagatgtacctcagttttcaaactatcaaactcctgatgattttcgcgaaagagtgaaactgcagttttattaagtgagaaagttggaattttcttt |
27787371 |
T |
|
| Q |
139 |
gaacacagaaattcaaagtcaagaaaattatcttccttaagttcagctgaagaaacaaaatcagcttgaacattggaa---------gaagcggccttaa |
229 |
Q |
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| T |
27787372 |
gaacacagaaactcaaagtcaagaaaattatcctccttaagctcatcagaagaaatcaaatcagcctgaacactggaagaatcatctgaagtagccttaa |
27787471 |
T |
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| Q |
230 |
acgttacaattgtaaaatctgaactagattcttcatcaaatttccaagaaacatcaataccatcgttccaaacaatttcttcattatcagatgagagagc |
329 |
Q |
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| T |
27787472 |
aagctagaatggtaaaatctgaaccagtttctttatcaagtttccatgaaagtccaacaccat------------tttcataattatcagatgaaatagt |
27787559 |
T |
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| Q |
330 |
agtccatgatttacaaaggatactagaacttgttacaaacgatgcaagctcaactccactgctaaatctgcaagaaaaagtgttatcaacaataatattc |
429 |
Q |
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| T |
27787560 |
agtccatgatttgctaaggatggtagaactagtcacaaaagatgcaagctcaattccactgctaaatctgcaagaaaaagttttatcagcaataatattc |
27787659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 247 - 426
Target Start/End: Original strand, 27766256 - 27766435
Alignment:
| Q |
247 |
tctgaactagattcttcatcaaatttccaagaaacatcaatacc-atcgttccaaacaatttcttcattatcagatgagagagcagtccatgatttacaa |
345 |
Q |
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||||| |||||||||||||||| ||||||||||| | | | || ||| || ||||||| |||||||||| |||||| | |||||||||||||| |||| |
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| T |
27766256 |
tctgagctagattcttcatcaactttccaagaaaaacccacccccatcatttgaaacaatgtcttcattattagatgaaatagcagtccatgattaacaa |
27766355 |
T |
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| Q |
346 |
aggatactagaacttgttacaaacgatgcaagctcaactccactgctaaatctgcaagaaaaagtgttatcaacaataata |
426 |
Q |
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| T |
27766356 |
aggatt-tagaacttgtgacaaaagatgcaagctcaattccacttctaaatctgtaagaaaaagtgttatcagaaataata |
27766435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 19700 - 19744
Alignment:
| Q |
358 |
cttgttacaaacgatgcaagctcaactccactgctaaatctgcaa |
402 |
Q |
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| T |
19700 |
cttgtcacaaatgatgcatgctcaattccactgctaaatctgcaa |
19744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 2159779 - 2159735
Alignment:
| Q |
358 |
cttgttacaaacgatgcaagctcaactccactgctaaatctgcaa |
402 |
Q |
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| T |
2159779 |
cttgtcacaaatgatgcatgctcaattccactgctaaatctgcaa |
2159735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 2174342 - 2174298
Alignment:
| Q |
358 |
cttgttacaaacgatgcaagctcaactccactgctaaatctgcaa |
402 |
Q |
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| T |
2174342 |
cttgtcacaaatgatgcatgctcaattccactgctaaatctgcaa |
2174298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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