View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_26 (Length: 477)
Name: NF15745_low_26
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Original strand, 22655825 - 22656261
Alignment:
| Q |
16 |
gtaagagcatctctaatggaagagtttatcttgattgcttatgatactttttgtggattcaaattgccacattgcatttaagcgatctctaaacaatttt |
115 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |
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| T |
22655825 |
gtaagagtatctccgatggaagagtttatcttgattgcttatgatactttttgtgggtccaaattgccacattgcatttaagcaatctctaaacaatttt |
22655924 |
T |
|
| Q |
116 |
aatcatttttgttccaatggtaattaaaataagcaaacctatacttgatcccaccaatttatatatttttgggttaattaagtttttaccaacaaattat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22655925 |
aatcatttttgttccaatggtaattaaaataagcaaacctatacttgatcccaccaatttatatatttttgggttaattaagtttttactaacaaattat |
22656024 |
T |
|
| Q |
216 |
gagatagacatcactgcctatctcatttgaatgagacctatgatgttaagaacaactcaattattatctgataatttgttagtatcgaaagcactagagc |
315 |
Q |
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||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22656025 |
gagataggcgtca------------tttgaatgagacctataatgttaagaacaactcaattattatctgataatttgttagtattgaaagcactagagc |
22656112 |
T |
|
| Q |
316 |
atgtcgatgttgatgaactcctgtgtgaaaacaaggtggttttctgagatgatgcatgaggtatactatcgcattacaccatgcttcatgccgaggtgcg |
415 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
22656113 |
atgtcgatgttgatgaactcctatgtgaaaacaaggtggtgttctaagatgatgcatgaggtatactatcgcattacaccatgcttcatgtcgaggtgag |
22656212 |
T |
|
| Q |
416 |
caccttagcctgatctaatgttggtcttgttattcggcttgtttgcttc |
464 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
22656213 |
caccttagcctgatctaatgttggtctcgttattcggcttatttgcttc |
22656261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 42553408 - 42553510
Alignment:
| Q |
23 |
catctctaatggaagagtttatcttgattgcttatgatactttttgtggattcaaattgccacattgcatttaagcgatctctaaacaattttaatcatt |
122 |
Q |
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|||||| | |||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
42553408 |
catctccagtggaagagcttatcttgattgcttatgatactttttgtgggcccaaactgccacattgcatctaagcaatctctaagcaattttaatcatt |
42553507 |
T |
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| Q |
123 |
ttt |
125 |
Q |
| |
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||| |
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| T |
42553508 |
ttt |
42553510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 3885208 - 3885340
Alignment:
| Q |
19 |
agagcatctctaatggaagagtttatcttgattgcttatgatactttttgtggattcaaattgccacattgcatttaagcgatctctaaacaattttaat |
118 |
Q |
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|||||||||| ||||||||| | |||||| |||||| | |||||||||||| | |||||||||||||||||||||||| |||||||| |||| | ||| |
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| T |
3885208 |
agagcatctccaatggaagaactaatcttggttgcttgagttactttttgtgggtccaaattgccacattgcatttaagcaatctctaagcaatctcaat |
3885307 |
T |
|
| Q |
119 |
catttttgttccaatggtaattaaaataagcaa |
151 |
Q |
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| || | ||||||||||| || ||||||||| |
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| T |
3885308 |
gagttctactccaatggtaactacaataagcaa |
3885340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 16234186 - 16234084
Alignment:
| Q |
41 |
ttatcttgattgcttatgatactt----tttgtggattcaaattgccacattgcatttaagcgatctctaaacaattttaatcatttttgttccaatggt |
136 |
Q |
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|||||||||||||||||||||||| ||||||| | || ||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
16234186 |
ttatcttgattgcttatgatacttactttttgtgggcccgaactgccacattgcatctaagaaatctctaagcaattttaatcatttttactccaatggt |
16234087 |
T |
|
| Q |
137 |
aat |
139 |
Q |
| |
|
||| |
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|
| T |
16234086 |
aat |
16234084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 40500356 - 40500272
Alignment:
| Q |
20 |
gagcatctctaatggaagagtttatcttgattgcttatgatactttttgtggattcaaattgccacattgcatttaagcgatctc |
104 |
Q |
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||||||||| ||||||||| ||||||| |||| ||| | |||||||||||| |||||||||||||||||| ||||| ||||| |
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| T |
40500356 |
gagcatctccaatggaagaacttatctttattgtttaagttactttttgtgggcccaaattgccacattgcatctaagcaatctc |
40500272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 31516548 - 31516488
Alignment:
| Q |
43 |
atcttgattgcttatgatactttttgtggattcaaattgccacattgcatttaagcgatct |
103 |
Q |
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|||||||||||||| |||||||| ||| || ||||||||||||||||||||||| |||| |
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| T |
31516548 |
atcttgattgcttaaattactttttatgggtttaaattgccacattgcatttaagcaatct |
31516488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 17605698 - 17605794
Alignment:
| Q |
19 |
agagcatctctaatggaagagtttatcttgattgcttatgatactttttgtggattcaaattgccacattgcatttaagcgatctctaaacaatttta |
116 |
Q |
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|||||||||| ||||| ||| |||| ||| |||||| | |||||||||||| |||||||||||||||||| ||||| |||| ||| |||||||| |
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| T |
17605698 |
agagcatctccaatgggagaaattattttggttgcttgagttactttttgtgggcccaaattgccacattgcatctaagcaatct-taatcaatttta |
17605794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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