View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_low_27 (Length: 473)
Name: NF15745_low_27
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_27 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 3149232 - 3149495
Alignment:
| Q |
5 |
agtagtgaaagtctctcaaaggtcaggcctaaagtattaatcaagtcggttcttcaatcaataccaatttattttatgagtttgtttactcttccgatga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
3149232 |
agtagtgaaagtctctcaaaggtcaggccaaaagtattaatcaagtcggttcttcaatcaataccaacttattttatgagtttgtttactcttccaatga |
3149331 |
T |
|
| Q |
105 |
ctttatgcaatgggattgaaaaaataataaacttcttttagtggggtcatttaggggcccaaagcaaatgaataaattgattgtc--ttcgtataagcca |
202 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||| |||||||||| | |
|
|
| T |
3149332 |
ctttatgcgatgggattgaaaaaatgataaacttcttttagtggggtcattcaggagcccaaaacaaatgaataaattaattgtcttttcgtataagtta |
3149431 |
T |
|
| Q |
203 |
tctatg--caaaagaaaaatggagggatgaactttaaaagtttgacaatattcaatcttgctat |
264 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3149432 |
tctatgaaaaaaaaaaaaatggagggatgaagtttaaaagtttgacaatattcaatcttgctat |
3149495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 204648 - 204606
Alignment:
| Q |
202 |
atctatgcaaaagaaaaatggagggatgaactttaaaagtttg |
244 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
204648 |
atctatgcacaagaaagatggagggatgagctttaaaagtttg |
204606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 24176305 - 24176347
Alignment:
| Q |
202 |
atctatgcaaaagaaaaatggagggatgaactttaaaagtttg |
244 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
24176305 |
atctatgcacaagaaagatggagggatgagctttaaaagtttg |
24176347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 13501915 - 13501957
Alignment:
| Q |
202 |
atctatgcaaaagaaaaatggagggatgaactttaaaagtttg |
244 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
13501915 |
atctatgcacaagaaagatggagggatgagctttaaaagtttg |
13501957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University