View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_29 (Length: 469)
Name: NF15745_low_29
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 15874648 - 15874208
Alignment:
| Q |
16 |
caaattcaagatctagaaatttagttactcaattcaaaaagttatctactattcaaaagttatctactatggataaaaggctttcacaactcaaagaggc |
115 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
15874648 |
caaattcaagatttagaaatttagttactcaattcaaaa-gttatctactattcaaaagttatctactatggataaaagactttcgcaactcaaagaggc |
15874550 |
T |
|
| Q |
116 |
acgagaaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttgcggcaaaatgaaagattttataagtattgtaca |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15874549 |
acaagaaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttgcggcaaaatgaaagattttataagtattgttca |
15874450 |
T |
|
| Q |
216 |
ccaaagactatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaatt |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874449 |
ccaaagattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaatt |
15874350 |
T |
|
| Q |
316 |
atgccnnnnnnnttgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgagga |
415 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874349 |
atgccaaaaaaattgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgagga |
15874250 |
T |
|
| Q |
416 |
tgcaattgaaggctacaatgataatgatcttgcttggatatt |
457 |
Q |
| |
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| T |
15874249 |
tgcaattgaaggctacaatgataatgatcttgcttggatatt |
15874208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 15899421 - 15899861
Alignment:
| Q |
16 |
caaattcaagatctagaaatttagttactcaattcaaaaagttatctactattcaaaagttatctactatggataaaaggctttcacaactcaaagaggc |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
15899421 |
caaattcaagatctagaaatttagttactcaattcaaaa-gttatctactattcaaaagttatcttctatggataaaaggctttcgcaactcaaagaggc |
15899519 |
T |
|
| Q |
116 |
acgagaaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttgcggcaaaatgaaagattttataagtattgtaca |
215 |
Q |
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|| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15899520 |
acaagaaaggtttgatcgaaataatgaaattttgattcctaggatccaaagggttccaatgtttttgcggcaaaatgaaagattttataagtattgtaca |
15899619 |
T |
|
| Q |
216 |
ccaaagactatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaatt |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15899620 |
ccaaagattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctgatt |
15899719 |
T |
|
| Q |
316 |
atgccnnnnnnnttgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgagga |
415 |
Q |
| |
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||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
15899720 |
atggcaaaaaaattgataaagatgctaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaagatttgaagaatatgttcactgagga |
15899819 |
T |
|
| Q |
416 |
tgcaattgaaggctacaatgataatgatcttgcttggatatt |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15899820 |
tgcaattgaaggctacaatgataatgatcttgcttggatatt |
15899861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 457
Target Start/End: Original strand, 15920455 - 15920889
Alignment:
| Q |
22 |
caagatctagaaatttagttactcaattcaaaaagttatctactattcaaaagttatctactatggataaaaggctttcacaactcaaagaggcacgaga |
121 |
Q |
| |
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||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15920455 |
caagagctagaaatttagttactcaata-aaaaggttatctactattcaaaagttatctactatggataaaaggctttcacaactcaaagaggcacaaga |
15920553 |
T |
|
| Q |
122 |
aaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttgcggcaaaatgaaagattttataagtattgtacaccaaag |
221 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920554 |
aaggtttgatcgaaataatgaaattttgattcctaggatccaaagggttccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaag |
15920653 |
T |
|
| Q |
222 |
actatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaattatgccn |
321 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
15920654 |
attatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgcttattatggca |
15920753 |
T |
|
| Q |
322 |
nnnnnnttgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaat |
421 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
15920754 |
aaaaaattgataaagatgttaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaatatttgaagaatatgttcactgaggatgcaat |
15920853 |
T |
|
| Q |
422 |
tgaaggctacaatgataatgatcttgcttggatatt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
15920854 |
tgaaggctacaatgataatgatcttgcttggatatt |
15920889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 83 - 462
Target Start/End: Complemental strand, 14060997 - 14060618
Alignment:
| Q |
83 |
tatggataaaaggctttcacaactcaaagaggcacgagaaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttg |
182 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||| | | |||||| | ||||| | |||||| ||||||||||| ||||||||||| | |||||| |
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|
| T |
14060997 |
tatggataaaaggatttcccaactaaaagaggcacaactgaagtttgagcaaaatagtaaaatttcaattcctaagattcaaagggttcctaagtttttg |
14060898 |
T |
|
| Q |
183 |
cggcaaaatgaaagattttataagtattgtacaccaaagactatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattaca |
282 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||| |||| ||| |||||||||||||| |||| |
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|
| T |
14060897 |
cgacaaaatgaaagattttataagtattgctcaccaaagattatatcatttggtccgatccatcacaataataaatgtcttaaagaaggagagcagtaca |
14060798 |
T |
|
| Q |
283 |
agcttctatggacatcaatatttgttgctaattatgccnnnnnnnttgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataa |
382 |
Q |
| |
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| ||||||||||| || | |||| ||| | |||| | | || |||||| |||| ||||||| || ||||||||||| |||||||||||||| |
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| T |
14060797 |
aacttctatggacctctacatttcttgaggaatatggcaaagaaatcaatcaagatggtaaccaagcatgcaaacttttgcttaacaagattgaagataa |
14060698 |
T |
|
| Q |
383 |
tattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattcttcg |
462 |
Q |
| |
|
||||||| | ||||||| ||||||||||| |||||||||||||| | |||||| |||||||||||||||||||| |||| |
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|
| T |
14060697 |
tattgaagaattgaagaacatgttcactgaagatgcaattgaaggattcaatgacaatgatcttgcttggatattgttcg |
14060618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 462
Target Start/End: Complemental strand, 14049609 - 14049247
Alignment:
| Q |
86 |
ggataaaaggctttcacaactcaaagaggcacgagaaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttgcgg |
185 |
Q |
| |
|
||||||||||||||| ||||| ||||||| || | || |||||| | ||||| || |||||| ||||||||||||||||||||||||| |||||| | |
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|
| T |
14049609 |
ggataaaaggctttcccaactaaaagaggtacaactaaagtttgagcaaaatagtcaaatttcaattcctaagatccaaagggttccaaagtttttgaga |
14049510 |
T |
|
| Q |
186 |
caaaatgaaagattttataagtattgtacaccaaagactatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagc |
285 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| || ||||||||| | || ||| |||||||||||||||||||||| |
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|
| T |
14049509 |
caaaatgaaagattttataagtat--------------tatctcatttggtcccatccatcacaatagtgaatgtcttaaagaaggagagcattacaagc |
14049424 |
T |
|
| Q |
286 |
ttctatggacatcaatatttgttgctaattatgccnnnnnnnttgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatat |
385 |
Q |
| |
|
|||| |||||||| | |||||||| | |||| | | || |||||| || |||| || || ||||||||||| ||||||||||||||||| |
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|
| T |
14049423 |
ttctgtggacatctacatttgttgaggaatatggcaaacaaatcaatcaagatggccaccaagcctgcaaacttttgcttaacaagattgaagataatat |
14049324 |
T |
|
| Q |
386 |
tgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattcttcg |
462 |
Q |
| |
|
|| | | ||||||| |||||||| || |||||||||||||| | |||||| || ||||||||||||||||| |||| |
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|
| T |
14049323 |
tgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaacgatcttgcttggatattgttcg |
14049247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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