View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_3 (Length: 682)
Name: NF15745_low_3
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 7 - 670
Target Start/End: Complemental strand, 33089847 - 33089184
Alignment:
| Q |
7 |
tccaagaaaattgaaaccaaacccaattcaacaaacctctccaaaatcacttttttactctttgatgagtaaaccaaatgaaaaattgttgataaacatg |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089847 |
tccaataaaattgaaaccaaacccaattcaacaaacctctccaaaatcacttttttactctttgatgagtaaaccaaatgaaaaattgttgataaacatg |
33089748 |
T |
|
| Q |
107 |
cttttgtagaagcactcccaatctcaacattaaccttaaccatgttgaccaaagattcaacaatcccttcaatttttgccaatgactcaacattcatttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089747 |
cttttgtagaagcactcccaatctcaacattaaccttaaccatgttgaccaaagattcaacaatcccttcaatttttgccaatgactcaacattcatttc |
33089648 |
T |
|
| Q |
207 |
cttaagcaacaaagaagcattttgcctggttgaaattttttgttgatcatttaagaaccaaaccaaacaactcaaagaatttgaagatcccaaaaagaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089647 |
cttaagcaacaaagaagcattttgcctggttgaaattttttgttgatcatttaagaaccaaaccaaacaactcaaagaatttgaagatcccaaaaagaca |
33089548 |
T |
|
| Q |
307 |
aatctactctcttcagaaagaggacgcatccatgtcagcacttccaaaatctcttccaaaagaacaacgttcttctcaatcaaaccacgtgagaaagaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089547 |
aatctactctcttcagaaagaggacgcatccatgtcagcacttccaaaatctcttccaaaagaacaacgttcttctcaatcaaaccacgtgagaaagaat |
33089448 |
T |
|
| Q |
407 |
caaaaaccttagcaagaacaagagaaacaccatttgaaactataaccttcttgttcctctcactctcttttccccaaccctttatctttctcaccaattc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089447 |
caaaaaccttagcaagaacaagagaaacaccatttgaaactataaccttcttgttcctctcactctcttttccccaaccctttatctttctcaccaattc |
33089348 |
T |
|
| Q |
507 |
aaaacacttgctctcatctccttgttgcgctgccgaaagaatcctattacacgtatcagtaacttcataacgagttactggaatacgtggagttgggatt |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089347 |
aaaacacttgctctcatctccttgttgcgctgccgaaagaatcctactacacgtatcagtaacttcataacgagttactggaatacgtggagttgggatt |
33089248 |
T |
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| Q |
607 |
ctttcgacgccataggaacagtgttgaacacaccaatcttgaatcattctacgtagagagtgat |
670 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089247 |
ctttcgacgccataggaacggtgttgaacacaccaatcttgaatcattctacgtagagagtgat |
33089184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 29353916 - 29353842
Alignment:
| Q |
400 |
aaagaatcaaaaaccttagcaagaacaagagaaacaccatttgaaactataaccttcttgttcctctcactctct |
474 |
Q |
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||||||||||||||| |||| | |||| |||||| |||||| || ||||||| |||| ||||||||||||||| |
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| T |
29353916 |
aaagaatcaaaaaccgtagctaaaacagaagaaactccatttccaattataaccctcttattcctctcactctct |
29353842 |
T |
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