View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_30 (Length: 462)
Name: NF15745_low_30
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 36964424 - 36963989
Alignment:
| Q |
11 |
agaatatggaaagagttggttcaaggacacacattgcagtgacaatgaagggagcaaagaacatgaaagtgacgacaaccatgaagacaaagtattggga |
110 |
Q |
| |
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|||| ||||||| || ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36964424 |
agaagatggaaacagctggttcaaggacaaacattgcagtgacattgaagggagcatagaacatgaaagtgatgacaaccatgaagacaaagtattggga |
36964325 |
T |
|
| Q |
111 |
atggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatg |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36964324 |
atggaaataaatccattatacataagcatggctatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggcgacatg |
36964225 |
T |
|
| Q |
211 |
cttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||| |
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| T |
36964224 |
cttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcagaggaagcttcacactcaacaacctcc |
36964125 |
T |
|
| Q |
311 |
catgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatgattttgaataaagaatgttcg |
410 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36964124 |
catgtaatcaagctctttgtttgctctgttattgtcttcagaaatataatagacaaaaattgtatcctgaatgttgatgattttgaataaagaatgttcg |
36964025 |
T |
|
| Q |
411 |
tcttaaatatcaactatctataacggataacaactg |
446 |
Q |
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| T |
36964024 |
tcttaaatatcaactatctataacggataacaactg |
36963989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 36976209 - 36975815
Alignment:
| Q |
11 |
agaatatggaaagagttggttcaaggacacacattgcagtgacaatgaagggagcaaagaacatgaaagtgacgacaaccatgaagacaaagtattggga |
110 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36976209 |
agaagatggaaacagttggttcaaggacacacattgcagtgacattgaagggagcatagaacatgaaagtgacgacaaccatgaagacaaagtattggga |
36976110 |
T |
|
| Q |
111 |
atggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatg |
210 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36976109 |
atggaaataaatccattctacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggaggcatg |
36976010 |
T |
|
| Q |
211 |
cttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcc |
310 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||| ||| |||||||||| |||| |
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| T |
36976009 |
cttatttccgttttctaggcaacatgaatgataagatctatgtcactgtagttgtcgcacttaataaattgcggaagaagtttcacactcaacaacctcc |
36975910 |
T |
|
| Q |
311 |
catgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatgattttgaataaagaat |
405 |
Q |
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| T |
36975909 |
catgtaaccaaactctttgtttgctctgttattgtgttcagaaatacaagagacaaaaattgtattgagagtattgatgattttgagtaaagaat |
36975815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 150 - 426
Target Start/End: Complemental strand, 36970019 - 36969749
Alignment:
| Q |
150 |
ttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatct |
249 |
Q |
| |
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|||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |
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| T |
36970019 |
ttttcaactgcattttgggtattttggggatctttaatactcattgcatcttggagacatgcttatttctgttttctaagcaacatgaacgataagatct |
36969920 |
T |
|
| Q |
250 |
atgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttc |
349 |
Q |
| |
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|||||||||| |||||||| |||||||| |||||| |||| ||| |||||||||| || |||||||| |||||||| | |||||||||||| ||| || |
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| T |
36969919 |
atgtcactgttgttgtcacgtttaataaattgcggaggaagtttcacactcaacaacct-ccatgtaaccaaactctgtatttgctctgttattgtgtta |
36969821 |
T |
|
| Q |
350 |
agaaatataagagacaaaaattgtatcctgaatgttgatgattttgaataaagaatgttcgtcttaaatatcaacta |
426 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36969820 |
agaaatataagagacaaaatttgtat-----gtgttgatgattttgaataaagaatgtttgtcttaaatatcaacta |
36969749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 36973361 - 36973230
Alignment:
| Q |
124 |
cattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
223 |
Q |
| |
|
|||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36973361 |
cattctacataagcattgctatggggttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
36973262 |
T |
|
| Q |
224 |
tctaagcaacttgaatgataagatctatgtca |
255 |
Q |
| |
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|||||||||| ||||||||| |||||| |||| |
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| T |
36973261 |
tctaagcaacatgaatgataggatctaagtca |
36973230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 36973218 - 36973109
Alignment:
| Q |
296 |
cactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatgattttg |
395 |
Q |
| |
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|||||||| | |||| |||||| |||||| | |||||||||| ||| || || ||||||| |||||||||||||||| || | ||||||||||||| |
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| T |
36973218 |
cactcaacgacctccaatgtaaccaaactatgtgtttgctctattattgcgttaagaaatacaagagacaaaaattgtctcaagttagttgatgattttg |
36973119 |
T |
|
| Q |
396 |
aataaagaat |
405 |
Q |
| |
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|||||||||| |
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| T |
36973118 |
aataaagaat |
36973109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 67 - 445
Target Start/End: Original strand, 5868949 - 5869327
Alignment:
| Q |
67 |
aagaacatgaaagtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttg |
166 |
Q |
| |
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|||||||||||| ||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
5868949 |
aagaacatgaaaatgacggcaaccatggagacaaggtattggggatggaaataaatccattatacataagcatggctatggggttttcaactggattttg |
5869048 |
T |
|
| Q |
167 |
ggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtc |
266 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||| |
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| T |
5869049 |
ggtattttggggatctttaatactcattgcatcttggagacatgcttatttccgttttataagcaacatgaatgataagatccatgtcactgtagttgtc |
5869148 |
T |
|
| Q |
267 |
acacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaa |
366 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
5869149 |
gcacttaataaactgcggaggaagtttcacactcaacaacctcccatgtaaccaaactctttgtttgctctgttattgtcttcagaaatagaagagacag |
5869248 |
T |
|
| Q |
367 |
aaattgtatcctgaatgttgatgattttgaataaagaatgttcgtcttaaatatcaactatctataacggataacaact |
445 |
Q |
| |
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||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
5869249 |
aaattgtctccagtttgttgatgattttgaataaagaatgtttgtcttaaatatcaactatctataactgataacaact |
5869327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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