View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_low_32 (Length: 447)

Name: NF15745_low_32
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_low_32
NF15745_low_32
[»] chr3 (6 HSPs)
chr3 (18-199)||(25228884-25229065)
chr3 (18-199)||(25217071-25217252)
chr3 (18-199)||(25233611-25233792)
chr3 (244-418)||(25216890-25217063)
chr3 (244-407)||(25228715-25228876)
chr3 (255-353)||(25233486-25233584)
[»] chr5 (10 HSPs)
chr5 (18-192)||(17157443-17157617)
chr5 (18-192)||(17161365-17161539)
chr5 (20-191)||(17164411-17164582)
chr5 (18-192)||(28153376-28153550)
chr5 (18-191)||(28148721-28148894)
chr5 (27-192)||(26399186-26399351)
chr5 (244-345)||(17161647-17161748)
chr5 (244-297)||(17157723-17157776)
chr5 (210-247)||(25889759-25889796)
chr5 (210-246)||(23954551-23954587)
[»] chr1 (3 HSPs)
chr1 (25-99)||(19317489-19317563)
chr1 (210-243)||(10923116-10923149)
chr1 (209-246)||(32216441-32216478)
[»] chr2 (1 HSPs)
chr2 (212-246)||(18947275-18947309)
[»] chr8 (1 HSPs)
chr8 (210-246)||(43643360-43643396)
[»] chr7 (2 HSPs)
chr7 (210-246)||(18797692-18797728)
chr7 (211-246)||(29173887-29173922)
[»] chr4 (2 HSPs)
chr4 (210-246)||(25184503-25184539)
chr4 (210-246)||(33816301-33816337)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 25229065 - 25228884
Alignment:
Q  18 atcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25229065 atcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 25228966  T
Q  118 agcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 199  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25228965 agtagaagttctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 25228884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 25217252 - 25217071
Alignment:
Q  18 atcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25217252 atcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 25217153  T
Q  118 agcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 199  Q
    || |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  25217152 agtagaagttctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacgttaagttcaatat 25217071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 25233792 - 25233611
Alignment:
Q  18 atcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25233792 atcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 25233693  T
Q  118 agcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 199  Q
    || |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  25233692 agtagaagttctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacgttaagttcaatat 25233611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 244 - 418
Target Start/End: Complemental strand, 25217063 - 25216890
Alignment:
Q  244 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaat 343  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25217063 tttcattattgtttgtattcatttaacaaatttatacaagatctcataatatatatttgtcatatcaaattatcgtagtaaatgcatttaattgagtaat 25216964  T
Q  344 aatcaatattcttttttaggggacaaataatcgatgattaaaaccttcatatcaatttatcaaactgactttttt 418  Q
    |||||||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  25216963 aatcaatatt-ttttttaggggacaaataatcgataattggaaccttcatatcaatttatcaaactgactttttt 25216890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 244 - 407
Target Start/End: Complemental strand, 25228876 - 25228715
Alignment:
Q  244 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaat 343  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  25228876 tttcattattgtttgtatacaattaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatc-tagtaaatgcatttaattaagtaat 25228778  T
Q  344 aatcaatattcttttttaggggacaaataatcgatgattaaaaccttcatatcaatttatcaaa 407  Q
    ||||| || | ||||||||||||  ||||||| || |||||||  |||||||||||||||||||    
T  25228777 aatcattaat-ttttttaggggagtaataatcaataattaaaattttcatatcaatttatcaaa 25228715  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 25233584 - 25233486
Alignment:
Q  255 tttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaataatcaatatt 353  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  25233584 tttgtatacaattaacaaatttatacaagattccatgatatatatttatcatatcaaattatcatagtaaatgcatttaattgagtaataatcaatatt 25233486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 17157443 - 17157617
Alignment:
Q  18 atcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 117  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||    
T  17157443 atcacaaatattgtttagataaatggattagtttcaagaaccacacttgtcccctttgcagagaatcattgagaccagaaagggccatcactgagcttgg 17157542  T
Q  118 agcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 192  Q
    ||| ||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  17157543 agctgaaattctttcatttaatttttgtgtcatccatagtgatcgagatcgtgatgattggtggctacgttgagt 17157617  T

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Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 17161365 - 17161539
Alignment:
Q  18 atcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 117  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||    
T  17161365 atcacaaatattgtttagataaatggattagtttcaagaaccacacttgtcccctttgcagagaatcattgagaccagaaagggccatcactgagcttgg 17161464  T
Q  118 agcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 192  Q
    ||| ||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||    
T  17161465 agctgaaattctttcatttaatttttgtgtcatccatagtgatcgagatcgtgatgattggtggctgcgttgagt 17161539  T

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Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 17164411 - 17164582
Alignment:
Q  20 cacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggag 119  Q
    |||||| ||||||||||||||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  17164411 cacaaatattgtttagataaatggattggtttcaagaaccacacttgtcccctttgtagagaatcattgagaccagaaagggccatcactgagcttggag 17164510  T
Q  120 cagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgag 191  Q
    | ||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||  |||||||||||||    
T  17164511 ctgaaattctttcatttaatttttgtgtcatccgtaatgatcgagatcgtgatgatttttggctacgttgag 17164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 28153376 - 28153550
Alignment:
Q  18 atcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 117  Q
    |||| ||| ||||||| ||||||||| || | ||||| ||||| ||||| |||||||| |||||||||||||||||| | ||||| |||||||||| |||    
T  28153376 atcataaaaattgtttggataaatgggttggattcaaaaaccacacttgccctctttgcagagaatcattgagaccaaagagagctatcactgagcttgg 28153475  T
Q  118 agcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 192  Q
    ||| ||| |||||  |||| ||||||  ||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  28153476 agctgaagttcttgaatttaattttttcgccattcgtaaggatcgcgatcgtgatgattggtggctacgctgagt 28153550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 28148721 - 28148894
Alignment:
Q  18 atcacaaacattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatgg 117  Q
    |||| ||| ||||||| ||||||||| || | ||||| ||||| ||||| |||||||| |||||||| ||||||||| | |||||||||||||||| |||    
T  28148721 atcataaaaattgtttggataaatgggttggattcaaaaaccacacttgccctctttgcagagaatcgttgagaccaaagagagccatcactgagcttgg 28148820  T
Q  118 agcagaaattctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgag 191  Q
    ||| ||| |||||  |||| |||||| |||||||||||  ||||| |||| ||||||||||||| |||||||||    
T  28148821 agctgaagttcttgaatttaatttttttgccattcgtaaggatcgtgatcatgatgattggtggttacgttgag 28148894  T

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Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 26399351 - 26399186
Alignment:
Q  27 attgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaat 126  Q
    ||||||| |||| |||| || ||||||||||| | |||||||| ||||| ||||||||||||||| ||| ||| ||||||||||||| |||||  ||  |    
T  26399351 attgtttggatagatgggttggtttcaagaacaacacttgtccactttgcagagaatcattgagatcaggaagggccatcactgagcttggagttgatgt 26399252  T
Q  127 tctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 192  Q
    |||||||||| ||||||||   |||  |||||||||||| | ||||||||||||| ||||||||||    
T  26399251 tctttcatttaatttttgtaatatttatagtgatcgagaacatgatgattggtggttacgttgagt 26399186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 17161647 - 17161748
Alignment:
Q  244 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaat 343  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||   | ||| |||||||||||||||| |||| |||||||||||||||    
T  17161647 tttcattattgtttgtatacaattaacaaatttatggaagatctcatgatatatgcctttcaaatcaaattatcgtagtgaatgcatttaattgagtaat 17161746  T
Q  344 aa 345  Q
    ||    
T  17161747 aa 17161748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 17157723 - 17157776
Alignment:
Q  244 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatat 297  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||||||||||    
T  17157723 tttcattattgtttgtatactactaacaaatttatgcaagatctcatgatatat 17157776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 25889796 - 25889759
Alignment:
Q  210 agggagcttctatgatgcagtcagaaaactgacttttc 247  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  25889796 agggagcttctacgatgcagtcaggaaactgacttttc 25889759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 23954551 - 23954587
Alignment:
Q  210 agggagcttctatgatgcagtcagaaaactgactttt 246  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  23954551 agggagcttctatggtgcagtcaggaaactgactttt 23954587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 19317489 - 19317563
Alignment:
Q  25 acattgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaag 99  Q
    ||||||||| ||||||||| ||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  19317489 acattgtttggataaatgggttgctttcaaaaaccacacttgtcctctttgtagagaatcattgagaccagaaag 19317563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 10923149 - 10923116
Alignment:
Q  210 agggagcttctatgatgcagtcagaaaactgact 243  Q
    |||||||||||||| |||||||||||||||||||    
T  10923149 agggagcttctatggtgcagtcagaaaactgact 10923116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 32216478 - 32216441
Alignment:
Q  209 tagggagcttctatgatgcagtcagaaaactgactttt 246  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  32216478 tagggagcttctacggtgcagtcagaaaactgactttt 32216441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 18947275 - 18947309
Alignment:
Q  212 ggagcttctatgatgcagtcagaaaactgactttt 246  Q
    |||||||||||||||||||||||||||||||||||    
T  18947275 ggagcttctatgatgcagtcagaaaactgactttt 18947309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 43643360 - 43643396
Alignment:
Q  210 agggagcttctatgatgcagtcagaaaactgactttt 246  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43643360 agggagcttctatggtgcagtcagaaaactgactttt 43643396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 18797728 - 18797692
Alignment:
Q  210 agggagcttctatgatgcagtcagaaaactgactttt 246  Q
    ||||||||| |||||||||||||||||||||||||||    
T  18797728 agggagcttttatgatgcagtcagaaaactgactttt 18797692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 29173922 - 29173887
Alignment:
Q  211 gggagcttctatgatgcagtcagaaaactgactttt 246  Q
    ||||||||||| ||||||||||||||||||||||||    
T  29173922 gggagcttctacgatgcagtcagaaaactgactttt 29173887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 25184539 - 25184503
Alignment:
Q  210 agggagcttctatgatgcagtcagaaaactgactttt 246  Q
    |||||||||||||| ||||||||||||||||||||||    
T  25184539 agggagcttctatggtgcagtcagaaaactgactttt 25184503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 33816301 - 33816337
Alignment:
Q  210 agggagcttctatgatgcagtcagaaaactgactttt 246  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  33816301 agggagcttctacgatgcagtcaggaaactgactttt 33816337  T

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