View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_36 (Length: 440)
Name: NF15745_low_36
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 31921849 - 31921460
Alignment:
| Q |
17 |
attgagacaatacatgtaggaacgtcaaagaaaatgtgggagttacctattacgagctaaagtgtggttaatccccatttattgcctcataaggaattca |
116 |
Q |
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| T |
31921849 |
attgagacaatacatgtaggaacgtcaaagaaaatgtgggagttacctattacgagctaaagtgtggttaatccccatttattgtctcataaggaattca |
31921750 |
T |
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| Q |
117 |
atgtataagtttgtaaaataaaaaacgagcaaatatctaccttgttatatcaccaaaatttgagacatgagacatcaatgtgaaaactagtatctttaca |
216 |
Q |
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| T |
31921749 |
atgtataagtttgtaaaataaaaaacgaacaaatatctaccttgttatatcaccaaaatttgag-------acatcaatgtgaaaactagtatctttaca |
31921657 |
T |
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| Q |
217 |
ttagatgcaatgttagttgaaactgcataagataacttttcatttatcgtatagtatcaatgtaaaaatacgagtattaacataaaaatacaagttttca |
316 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
31921656 |
ttaggtgcaatgttagttgaaactccataagataacttttcgtttatcgtatagtatcaatgtaaaaatacg--------------------agttttca |
31921577 |
T |
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| Q |
317 |
aacatacgtacactaaagttatctacagcctgcttggagtccaactcatagtcaattttgtccaaatcataaagccaa--tacatttgtctccaaaccat |
414 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31921576 |
aacatacatacactaaagttatctacaacctgcttggagtccaactcatagtcaattttgtccaaatcataaagccaatttacatttgtctccaaaccat |
31921477 |
T |
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