View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_38 (Length: 434)
Name: NF15745_low_38
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 49935210 - 49935609
Alignment:
| Q |
18 |
gatttgagctcattgtctcaccaagagtcattcactccctaaagagattttagaagagtcactaatgacaaggatctatctgagctgatttttagagaac |
117 |
Q |
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| T |
49935210 |
gatttgagctcattgtctcaccaagagtcattcactccctaaagagattttagaagagtcactaatgacaaggatctatctgagctgatttttagagaac |
49935309 |
T |
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| Q |
118 |
atggcaagataaaatcagttggtaatttaatttgctgtgatcatacaaaaagttagatgaaaaaatgtccttgaaaatttgcactctataccaaattaat |
217 |
Q |
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| T |
49935310 |
atggcaagagaaaatcagttggtaatttaatttgctgtgatcatacaaaaagttagatgaaaaaatgtccttgaaaatttgcactctataccaaattaat |
49935409 |
T |
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| Q |
218 |
catgcgttgattctttcttatataggcagtttaccgtggtatttcttacgatgatcaaacgctattaagaattggcatggaactcttacgtgccattcaa |
317 |
Q |
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| T |
49935410 |
catgcgttgattctttcttatataggcagtttaccatggtatttcttacgatgaccaaacgctattaaaaattggcatggaactc-----tgccatttaa |
49935504 |
T |
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| Q |
318 |
gatattgcgttacagttagagaaggtaaattttttgcatctgctcactttctgttgcttggatatttgaatttcttcaatcctatagccgtgttttttgc |
417 |
Q |
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| T |
49935505 |
gatattgcgttacggttagagaaggtaaattttttgcatttgctcactttctgttgcttggatatttgaatttcttcaatcctatagccgtgttttttgc |
49935604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 85 - 405
Target Start/End: Original strand, 49930662 - 49930970
Alignment:
| Q |
85 |
acaaggatctatctgagctgatttttagagaacatggcaagataaaatcagttggtaatttaatttgctgtgatcatacaaaaagttagatgaaaaaatg |
184 |
Q |
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| T |
49930662 |
acaaggatctatctgaacttattttccgagaacccggcaagagaaaattggttggtaattttatttgtggtgatcatacaaaaac----------acatg |
49930751 |
T |
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| Q |
185 |
tccttgaaaatttgcactctataccaaattaatcatgcgttgattctttcttatataggcagtttaccgtggtatttcttacgatgatcaaacgctatta |
284 |
Q |
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| T |
49930752 |
tccttgaaaatttgcactcta--ccaaattaactatgcattggctctttcttttataggcagtttacaatgttatttcttacgatgatcaaacacgatta |
49930849 |
T |
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| Q |
285 |
agaattggcatggaactcttacgtgccattcaagatattgcgttacagttagagaaggtaaattttttgcatctgctcactttctgttgcttggatattt |
384 |
Q |
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| T |
49930850 |
agaactggcatggaactcttaagtgccactcaagatattgagtcacagttggagaaggtaaactttttgcatttgctcactttctgttacttggatagtt |
49930949 |
T |
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| Q |
385 |
gaatttcttcaatcctatagc |
405 |
Q |
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| T |
49930950 |
taatttctcctatactatagc |
49930970 |
T |
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