View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_low_39 (Length: 432)

Name: NF15745_low_39
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_low_39
NF15745_low_39
[»] chr7 (4 HSPs)
chr7 (40-416)||(5375539-5375915)
chr7 (46-198)||(5369285-5369437)
chr7 (309-416)||(5368703-5368810)
chr7 (233-262)||(5368889-5368918)
[»] chr1 (3 HSPs)
chr1 (2-42)||(49282547-49282587)
chr1 (9-41)||(14737675-14737707)
chr1 (1-37)||(32515394-32515430)
[»] chr3 (2 HSPs)
chr3 (2-41)||(45590733-45590772)
chr3 (1-41)||(42530341-42530381)
[»] chr8 (3 HSPs)
chr8 (1-38)||(24326112-24326149)
chr8 (11-39)||(31751504-31751532)
chr8 (9-41)||(31884889-31884921)
[»] chr6 (1 HSPs)
chr6 (1-37)||(2732200-2732236)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 40 - 416
Target Start/End: Original strand, 5375539 - 5375915
Alignment:
Q  40 agattaattcaagctgtgtagtgtaatttaactaattaactttctcattctaacagcaggtcagttactttcttagcatatagtgccgccgagaactttt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5375539 agattaattcaagctgtgtagtgtaatttaactaattaactttctcattctaacagcaggtcagttactttcttagcatatagtgccgctgagaactttt 5375638  T
Q  140 taatatctggatctgatgatggaatagttcgagtttggaatgccagtgctcataacatcttcaactcttattgctttagttatatcagttatcatctcag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375639 taatatctggatctgatgatggaatagttcgagtttggaatgccagtgctcataacatcttcaactcttattgctttagttatatcagttatcatctcag 5375738  T
Q  240 tgcagttggcactgacagtgtattcatcatatattcaactcttgttaatacttctactgctactgctagtgtatacctcattcacaccgtttgactggtt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5375739 tgcagttggcactgacagtgtattcatcatatattcaactcttgttaatacttctactgctactgctagtgtatacctcattcacaccgtttgactgatt 5375838  T
Q  340 gtacttggagtaatttgttgtttccctttaacaaggatacttaatttttctttttaatatactctagatgattatat 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375839 gtacttggagtaatttgttgtttccctttaacaaggatacttaatttttctttttaatatactctagatgattatat 5375915  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 46 - 198
Target Start/End: Complemental strand, 5369437 - 5369285
Alignment:
Q  46 attcaagctgtgtagtgtaatttaactaattaactttctcattctaacagcaggtcagttactttcttagcatatagtgccgccgagaactttttaatat 145  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||| ||||||||||    
T  5369437 attcaagctgtgtaatgtcatttaactatttaactttctcattcttacagcaaggcagttacttgcttagcatatagtgccgccgagaattttttaatat 5369338  T
Q  146 ctggatctgatgatggaatagttcgagtttggaatgccagtgctcataacatc 198  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  5369337 ctggatctgatgatggaattgttcgagtttggaatgccagtactcataacatc 5369285  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 416
Target Start/End: Complemental strand, 5368810 - 5368703
Alignment:
Q  309 tgtatacctcattcacaccgtttgactggttgtacttggagtaatttgttgtttccctttaacaaggatacttaatttttctttttaatatactctagat 408  Q
    ||||||||||||||||||| ||||||||||  ||||  ||||||||||   ||||||||| || |||||||| |||||||||||| ||||||||||||||    
T  5368810 tgtatacctcattcacaccatttgactggtgttactatgagtaatttgccatttccctttgacgaggatactcaatttttcttttcaatatactctagat 5368711  T
Q  409 gattatat 416  Q
    ||||||||    
T  5368710 gattatat 5368703  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 5368918 - 5368889
Alignment:
Q  233 atctcagtgcagttggcactgacagtgtat 262  Q
    ||||||||||||||||||||||||||||||    
T  5368918 atctcagtgcagttggcactgacagtgtat 5368889  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 49282587 - 49282547
Alignment:
Q  2 catacgctttcccaaacagtctcacaagtgcttatgctaga 42  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  49282587 cataagctttcccaaacagtctcataagtgcttatgctaga 49282547  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 14737707 - 14737675
Alignment:
Q  9 tttcccaaacagtctcacaagtgcttatgctag 41  Q
    |||||||||||||||||||||||||||| ||||    
T  14737707 tttcccaaacagtctcacaagtgcttattctag 14737675  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32515430 - 32515394
Alignment:
Q  1 ccatacgctttcccaaacagtctcacaagtgcttatg 37  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  32515430 ccataagctctcccaaacagtctcacaagtgcttatg 32515394  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 45590733 - 45590772
Alignment:
Q  2 catacgctttcccaaacagtctcacaagtgcttatgctag 41  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  45590733 cataagctctcccaaacagtctcacaagtgcttatgctag 45590772  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42530341 - 42530381
Alignment:
Q  1 ccatacgctttcccaaacagtctcacaagtgcttatgctag 41  Q
    ||||| ||||||  |||||||||||||||||||||||||||    
T  42530341 ccataagctttctgaaacagtctcacaagtgcttatgctag 42530381  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24326112 - 24326149
Alignment:
Q  1 ccatacgctttcccaaacagtctcacaagtgcttatgc 38  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  24326112 ccataagctctcccaaacagtctcacaagtgcttatgc 24326149  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 31751532 - 31751504
Alignment:
Q  11 tcccaaacagtctcacaagtgcttatgct 39  Q
    |||||||||||||||||||||||||||||    
T  31751532 tcccaaacagtctcacaagtgcttatgct 31751504  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 31884921 - 31884889
Alignment:
Q  9 tttcccaaacagtctcacaagtgcttatgctag 41  Q
    ||||||||||| |||||||||||||||||||||    
T  31884921 tttcccaaacactctcacaagtgcttatgctag 31884889  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2732236 - 2732200
Alignment:
Q  1 ccatacgctttcccaaacagtctcacaagtgcttatg 37  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  2732236 ccataagcttttccaaacagtctcacaagtgcttatg 2732200  T

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