View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_low_4 (Length: 660)
Name: NF15745_low_4
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 2 - 644
Target Start/End: Original strand, 8946156 - 8946798
Alignment:
| Q |
2 |
gatttggtgatttctccatctattggactgataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaagaagtcgaaatttgata |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
8946156 |
gatttggtgatttctccatctattggactaataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaagaaatcaaaatttgata |
8946255 |
T |
|
| Q |
102 |
tatttgatatgaaaacagctccaacaacgtttgctcgatacacattagtatattgttcaataatatctccatcgtcacaaaccacaatattgttcttcac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8946256 |
tatttgatatgaaaacagctccaacaacgtttgcttgatacacataagaatattgttcaataatatctccatcgtcacaaaccacaatattgttcttcac |
8946355 |
T |
|
| Q |
202 |
tttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtgagtgag |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946356 |
tttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtgagtgag |
8946455 |
T |
|
| Q |
302 |
actccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaat |
401 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8946456 |
actccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagttgtcaaccatggtgttccattgcgaagagttttaaaat |
8946555 |
T |
|
| Q |
402 |
cggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaa |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946556 |
cggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaa |
8946655 |
T |
|
| Q |
502 |
agttggacctaatgaaatcgaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattt |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8946656 |
agttggacctaatgaaatcgaaagaacatcaacaccgtccgatattgcagcatcaattgcagccattatatcagatgaaattgcaattggatcttcattt |
8946755 |
T |
|
| Q |
602 |
tgtccccacacaatcttgtacatagacactctagacaatgtag |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946756 |
tgtccccacacaatcttgtacatagacactctagacaatgtag |
8946798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 176 - 581
Target Start/End: Complemental strand, 8962760 - 8962355
Alignment:
| Q |
176 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
275 |
Q |
| |
|
|||||||||||||| | | |||||||| |||||| |||||||| |||||| |||| || |||||||||| || | ||| ||||||||||| ||||||| |
|
|
| T |
8962760 |
tcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttccta |
8962661 |
T |
|
| Q |
276 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaagg |
375 |
Q |
| |
|
||| ||| | || ||||||||||||||||||||||||||||||||| || ||| |||||||| | ||||| ||||||||||||| ||| ||| || |
|
|
| T |
8962660 |
tataggaagagaagccggtgagtgagactccattaccaagtgtaagattcccaaaaaattcacgatctaaagtactagcagcaacagttatcacccatgg |
8962561 |
T |
|
| Q |
376 |
tgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatc |
475 |
Q |
| |
|
| |||||||| ||||||| ||||| || || | ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8962560 |
tattccattgtgaagagtgttaaaggaaggtccattattacctgctgaagtagacacaaaaacacctttttccatagctgcaaaagtggctattgcaatt |
8962461 |
T |
|
| Q |
476 |
ggatcttcattcaaaggtaaatcaaaagttgga-cctaatgaaatcgaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatca |
574 |
Q |
| |
|
|||||||||| |||| || || | |||| | |||||||| || ||||||||||| |||||||| ||||||||||||||||||||||| ||| | ||| |
|
|
| T |
8962460 |
ggatcttcatacaaa-ttagatgcattgttgaagcctaatgatattgaaagaacatccacaccgtctgatattgcggcatcaattgcagctattgtgtca |
8962362 |
T |
|
| Q |
575 |
gatgaaa |
581 |
Q |
| |
|
||||||| |
|
|
| T |
8962361 |
gatgaaa |
8962355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 197 - 579
Target Start/End: Complemental strand, 8974135 - 8973756
Alignment:
| Q |
197 |
ttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
296 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||| || ||||||||||||||| | ||| ||||||||||| |||||||||||| ||| | || | || |
|
|
| T |
8974135 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
8974036 |
T |
|
| Q |
297 |
gtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagtttt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||| ||| | | ||| ||| |||||||| |||||||||| |
|
|
| T |
8974035 |
gtgagactccattaccaagtgtaagattcccacgaaactcacgatccaaagtacttgcagcaacggttattacccatggtattccattgtgaagagtttt |
8973936 |
T |
|
| Q |
397 |
aaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaa |
496 |
Q |
| |
|
||| || || ||||||||||||||| |||||||| || ||| |||||||||||| ||||| ||| ||||| | |||||||||| ||||| || | |
|
|
| T |
8973935 |
aaaggaaggtccatcattacctgctgaagtagacacaacaacacccctttccatagctgaaaaagtggcaattgcgactggatcttcatacaaagataca |
8973836 |
T |
|
| Q |
497 |
tcaaaagtt-ggacctaatgaaatcgaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatga |
579 |
Q |
| |
|
| ||| ||||| ||| || |||||||||||||||||||||||||||| |||||||| ||| || |||||||||||||| |
|
|
| T |
8973835 |
t----tgttcaaacctagtgatattgaaagaacatcaacaccgtccgatattgaggcatcaactgcggctattatatcagatga |
8973756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 305 - 579
Target Start/End: Complemental strand, 8957617 - 8957346
Alignment:
| Q |
305 |
ccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcgg |
404 |
Q |
| |
|
||||| ||||||||||| || | ||||| || | ||||| ||| |||||||| |||||| | | |||||||||||||||| ||||||||| || | | |
|
|
| T |
8957617 |
ccatttccaagtgtaagggtcccttgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagtttcaagggcag |
8957518 |
T |
|
| Q |
405 |
ggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagt |
504 |
Q |
| |
|
| || | |||||| |||||| || ||||||| ||||||||||||||||||||| | || || |||| ||||| |||| |||||| | ||| | | |
|
|
| T |
8957517 |
gaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgttgcaatggcaacaggatcgtcatacaaaggcacgtcattaat |
8957418 |
T |
|
| Q |
505 |
tggacctaatgaaatcgaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatga |
579 |
Q |
| |
|
||| ||||| | |||||||||||||||||||| |||||||| || |||||||| || |||| ||||||||| |
|
|
| T |
8957417 |
---accaaatgatagtgaaagaacatcaacaccgtctgatattgccgcgtcaattgcggctattacatcagatga |
8957346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 9949680 - 9949857
Alignment:
| Q |
176 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
275 |
Q |
| |
|
||||||| |||||| || | ||||| ||| |||||||| |||||||||| |||| ||||||||||||||||| |||| | ||||||| |||||| ||| |
|
|
| T |
9949680 |
tcacaaatcacaatttttctattcacattgtttaattctttaacattgtcacacatactcatgaaaacaattgaaaaatcgttagcagataaattttcta |
9949779 |
T |
|
| Q |
276 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccag |
353 |
Q |
| |
|
||| |||| ||| |||||| | | |||||||||||||||| || || ||| |||||||||| |||||||| |
|
|
| T |
9949780 |
aataggcagacaaactaacgagtgataattcattaccaagtgtaagcatcacacaaaattcacgatccaaagtaccag |
9949857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 176 - 581
Target Start/End: Original strand, 21687478 - 21687880
Alignment:
| Q |
176 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
275 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||| |||||||||| |||| || ||| ||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
21687478 |
tcacaaaccacaatctttctcttcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttccta |
21687577 |
T |
|
| Q |
276 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaagg |
375 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||| | | | ||| |||||||||| ||||||||||||||||||| ||| ||| || |
|
|
| T |
21687578 |
gatagaaagacaaaccagtgagtgagactccattaccaagtgtaacagttcctaaaaattcacgatccaaagtaccagcagcaacagttatcacccatgg |
21687677 |
T |
|
| Q |
376 |
tgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatc |
475 |
Q |
| |
|
| ||||||| ||| || |||||| ||| || | ||||||||| ||| ||||||||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
21687678 |
tattccattatgaatagatttaaacgagggtccattattacctgcagaagtagacacaaaaatacctttttccatagctgcaaatgtcgcaattgcaact |
21687777 |
T |
|
| Q |
476 |
ggatcttcattcaaaggtaaatcaaaagttggacctaatgaaatcgaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcag |
575 |
Q |
| |
|
||||||| || |||| | | |||| | | || | ||| || ||||||| ||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
21687778 |
ggatctttatacaaaagaagatcatca---gagccaagtgatattgaaagaatgtcaacaccgtcagatattgcagcatcaattgcagctattatatcag |
21687874 |
T |
|
| Q |
576 |
atgaaa |
581 |
Q |
| |
|
|||||| |
|
|
| T |
21687875 |
atgaaa |
21687880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 578
Target Start/End: Original strand, 34963224 - 34963494
Alignment:
| Q |
305 |
ccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcgg |
404 |
Q |
| |
|
||||| |||||||||| | || | ||||| || | ||||| ||| |||||||| |||||| | | |||||||||||||||| | | ||||||| | | |
|
|
| T |
34963224 |
ccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagttataacccaaggtgttccattgtgtaatgttttaagggctg |
34963323 |
T |
|
| Q |
405 |
ggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagt |
504 |
Q |
| |
|
| || | ||| ||||||||| ||| ||||||| ||||||||||||||||||||| | ||||| || | | |||||||| |||||||| ||| | | |
|
|
| T |
34963324 |
gtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaatgttgctatagctacggcatcttcatacaaaggtacgtcattaat |
34963423 |
T |
|
| Q |
505 |
tggacctaatgaaatcgaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatg |
578 |
Q |
| |
|
| || ||||| | |||| |||||| |||||||| |||||||| || ||||||||||| |||| |||||||| |
|
|
| T |
34963424 |
t---ccaaatgataatgaaataacatcgacaccgtcggatattgcagcgtcaattgcagctattacatcagatg |
34963494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 30099332 - 30099260
Alignment:
| Q |
413 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
485 |
Q |
| |
|
|||||||| ||| | || |||| ||| |||||||||||||||||||| || |||||||| || |||||||||| |
|
|
| T |
30099332 |
ttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcat |
30099260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 30091581 - 30091653
Alignment:
| Q |
413 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
485 |
Q |
| |
|
|||||||| ||| | || |||| ||| ||||| ||||||||||||||||| |||||||| || | |||||||| |
|
|
| T |
30091581 |
ttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcat |
30091653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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