View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_43 (Length: 398)
Name: NF15745_low_43
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 48749149 - 48749526
Alignment:
| Q |
1 |
cttagccgccatgttaggtctcatatcttttgccctgttaattttagcttgttcttattggagactcactggtcaattactagacgaagaaaataacagc |
100 |
Q |
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| T |
48749149 |
cttagcagccatgttaggtctcatagcttttgcactgttaattttagcttgttcttattggagactcactggtcaattactagacgaagaaaataacagc |
48749248 |
T |
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| Q |
101 |
aacaacagaaacatggagaatgaaaaagaaggtgaaaattcaaacaaagaatctgtgaaagtttatgaagagaaagttcttgtcattatggctggtgatc |
200 |
Q |
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| T |
48749249 |
aacaacagaaacatggagaatgaaaaagaaggtgaaaattcaaacaaagaatctgtgaaagtttatgaagagaaagttcttgtcattatggctggtgatc |
48749348 |
T |
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| Q |
201 |
agaacccaacgtttttagctacacctgtttttccaaaatcatcttctgttatgaatctagatgcgactcactcggatgaacaacgcgaaaaccatgaaac |
300 |
Q |
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| T |
48749349 |
agaacccaacgtttttagctacacctgtttttccaaaatcatcttctgttatgaatctagatgcgaatcactcggatgaacaacgcgaaaaccatgaaac |
48749448 |
T |
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| Q |
301 |
tgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtgagtcagtaacataatttgtttttattttctt |
378 |
Q |
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| T |
48749449 |
tgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtcagtcagtaacataatttgtttttattttctt |
48749526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 370 - 398
Target Start/End: Original strand, 48749536 - 48749564
Alignment:
| Q |
370 |
tattttcttccatgattcgggaagtgtaa |
398 |
Q |
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| T |
48749536 |
tattttcttccatgattcgggaagtgtaa |
48749564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 3425762 - 3425695
Alignment:
| Q |
161 |
gtttatgaagagaaagttcttgtcattatggctggtgatcagaacccaacgtttttagctacacctgt |
228 |
Q |
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| T |
3425762 |
gtttatgaagagaatatccttgtcattatggctggtaatgagaacccaacattcttggctacccctgt |
3425695 |
T |
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