View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_low_44 (Length: 397)

Name: NF15745_low_44
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_low_44
NF15745_low_44
[»] chr6 (3 HSPs)
chr6 (15-331)||(787539-787855)
chr6 (325-380)||(787437-787492)
chr6 (325-362)||(23343960-23343997)
[»] chr3 (2 HSPs)
chr3 (325-380)||(52737774-52737829)
chr3 (325-385)||(4602398-4602458)
[»] chr5 (4 HSPs)
chr5 (326-380)||(35309093-35309147)
chr5 (325-380)||(41951676-41951731)
chr5 (325-386)||(30518630-30518691)
chr5 (325-386)||(30558970-30559031)
[»] chr1 (2 HSPs)
chr1 (325-397)||(18705653-18705725)
chr1 (325-380)||(20226767-20226820)
[»] chr7 (4 HSPs)
chr7 (326-384)||(36647433-36647491)
chr7 (325-380)||(34510834-34510888)
chr7 (325-380)||(41830338-41830393)
chr7 (342-397)||(4856619-4856674)
[»] chr8 (4 HSPs)
chr8 (325-384)||(4676294-4676354)
chr8 (325-376)||(39340-39391)
chr8 (214-313)||(4676431-4676530)
chr8 (348-380)||(26174404-26174436)
[»] chr2 (1 HSPs)
chr2 (325-362)||(24038419-24038456)
[»] chr4 (1 HSPs)
chr4 (325-377)||(55851937-55851989)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 787855 - 787539
Alignment:
Q  15 aggcaaaatgggatagttggtatttttgtacagctcagaggctgagtcatgacatcttttgaaccttagaatgcaaatatccaaattatatccaaatcct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787855 aggcaaaatgggatagttggtatttttgtacagctcagaggctgagtcatgacatcttttgaaccttagaatgcaaatatccaaattatatccaaatcct 787756  T
Q  115 taattaaaattttaaaatgaaaaggtaaacaacagacatactttagaaatgaattcaaatgattatgaaaaagaaattgccaaatcaagaaaagaaggaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787755 taattaaaattttaaaatgaaaaggtaaacaacagacatactttagaaatgaattcaaatgattatgaaaaagaaattgccaaatcaagaaaagaaggaa 787656  T
Q  215 tgaacaatcgatgcaaggaattcctcaatcacgagatcagaaaaacgaaattgaaataagaaaggaatcaagaacgtgacaccgaatcggaatcagtgaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  787655 tgaacaatcgatgcaaggaattcctcaatcacgagatcagaaaaacgaaattgaaataagaaaggaatcaagaacgtgacactgaatcggaatcagtgaa 787556  T
Q  315 aaaaggaagggaaaatg 331  Q
    ||||||||| |||||||    
T  787555 aaaaggaagagaaaatg 787539  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 787492 - 787437
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccat 380  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  787492 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccat 787437  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 23343997 - 23343960
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggatacca 362  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  23343997 gaaagtgcagcggaaaatatccttcaaggtggatacca 23343960  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 52737774 - 52737829
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccat 380  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  52737774 gaaaatgcagcggaaaatatccttcaaggtggataccagatttgctctgataccat 52737829  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 4602458 - 4602398
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccatattat 385  Q
    |||||||||||||||||  ||| ||||||||||||| |  || ||||||||||||| ||||    
T  4602458 gaaaatgcagcggaaaaattccttcaaggtggatactaggttagctctgataccatgttat 4602398  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 35309093 - 35309147
Alignment:
Q  326 aaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccat 380  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  35309093 aaaatgcagcggaaaatatccttcaaggtggataccagattagctctgataccat 35309147  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 41951676 - 41951731
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccat 380  Q
    |||||||||||||||||||||| |||||| |||||||| ||| ||||| |||||||    
T  41951676 gaaaatgcagcggaaaatatccttcaaggcggataccagattagctctaataccat 41951731  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 30518630 - 30518691
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccatattata 386  Q
    |||||||||||||||||||||  | ||||||||||||| ||| ||||| ||||||| |||||    
T  30518630 gaaaatgcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttata 30518691  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 30558970 - 30559031
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccatattata 386  Q
    |||||||||||||||||||||  | ||||||||||||| ||| ||||| ||||||| |||||    
T  30558970 gaaaatgcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttata 30559031  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 18705653 - 18705725
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccatattatataacttggcat 397  Q
    ||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||| ||| | ||| ||||||    
T  18705653 gaaaatgcagcggaaaaaatccttcaaggtggataccagattagctctgataccatgttagaaaacatggcat 18705725  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 20226767 - 20226820
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccat 380  Q
    ||||||||||||||||||  || |||||| |||||||| ||| |||||||||||||    
T  20226767 gaaaatgcagcggaaaat--ccttcaaggaggataccagattagctctgataccat 20226820  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 36647433 - 36647491
Alignment:
Q  326 aaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccatatta 384  Q
    ||||||||||||||||||||| ||||| || |||||| ||| |||||||||||||||||    
T  36647433 aaaatgcagcggaaaatatccttcaagatgaataccagattagctctgataccatatta 36647491  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 34510888 - 34510834
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccat 380  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||    
T  34510888 gaaaatgcagcggaaaat-tccttcaaggtggataccagattagctctgataccat 34510834  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 41830393 - 41830338
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgataccat 380  Q
    |||||||||||||||||||||| |||||||||||||||  || ||||| |||||||    
T  41830393 gaaaatgcagcggaaaatatccttcaaggtggataccaagttagctctaataccat 41830338  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 4856619 - 4856674
Alignment:
Q  342 tatccctcaaggtggataccatatttgctctgataccatattatataacttggcat 397  Q
    ||||| ||||| || |||||| | ||||||||||||||||||||| ||||||||||    
T  4856619 tatccttcaagatgaataccagaattgctctgataccatattataaaacttggcat 4856674  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 4676354 - 4676294
Alignment:
Q  325 gaaaatgcagcggaaaa-tatccctcaaggtggataccatatttgctctgataccatatta 384  Q
    ||||||||||||||||| ||||| |||||||||||||||  || |||||||||||||||||    
T  4676354 gaaaatgcagcggaaaaatatccttcaaggtggataccaggttagctctgataccatatta 4676294  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 39391 - 39340
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgata 376  Q
    |||||||||||||||||||||| |||||||||||| |  ||| |||||||||    
T  39391 gaaaatgcagcggaaaatatccttcaaggtggatatcggattagctctgata 39340  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 4676530 - 4676431
Alignment:
Q  214 atgaacaatcgatgcaaggaattcctcaatcacgagatcagaaaaacgaaattgaaataagaaaggaatcaagaacgtgacaccgaatcggaatcagtga 313  Q
    |||||||||||||||||  ||||| | ||| ||| ||| ||| ||||| |||||||  ||||||| ||||| |||  ||| ||||||| |||||||||||    
T  4676530 atgaacaatcgatgcaacaaattcgtgaattacgtgatgagagaaacggaattgaacgaagaaagaaatcacgaagatgaaaccgaattggaatcagtga 4676431  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 26174436 - 26174404
Alignment:
Q  348 tcaaggtggataccatatttgctctgataccat 380  Q
    ||||||||||||||||||||| |||||||||||    
T  26174436 tcaaggtggataccatatttgttctgataccat 26174404  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 24038456 - 24038419
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggatacca 362  Q
    |||||||||||||||||||||| |||||||||||||||    
T  24038456 gaaaatgcagcggaaaatatccttcaaggtggatacca 24038419  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 55851937 - 55851989
Alignment:
Q  325 gaaaatgcagcggaaaatatccctcaaggtggataccatatttgctctgatac 377  Q
    |||||||||||||||||||||  || ||||||||||||   ||||||||||||    
T  55851937 gaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatac 55851989  T

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