View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_45 (Length: 396)
Name: NF15745_low_45
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 15662472 - 15662104
Alignment:
| Q |
14 |
gaacatgcagccacatatgattgaaatgaaaaattctgaaggaatgacacctcgcgaactatttaccaaagaacatgctgaattgcttaaaaaaggagag |
113 |
Q |
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| T |
15662472 |
gaacatgcagccacatatgattgaaatgaaaaattctgaaggaatgacacctcgcgaactatttaccaaagaacatgccgaattgcttaaaaaaggagag |
15662373 |
T |
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| Q |
114 |
tcatggatgaagcaaacagcgaattcttgtatggttgtttcgactctcattgcaactggagtgttttcagctgcatttagcttaccaggtggaaacaatg |
213 |
Q |
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| T |
15662372 |
tcatggatgaagcaaacagcgaattcttgtatggttgtttcgactctaattgcaactggagtgttttcagctgcatttagcttaccaggtggaaacaatg |
15662273 |
T |
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| Q |
214 |
ataacacagaatctcctaattatttagataagcctgcattcctcgtatttgctttatccgactccatggcacttatctcgtcttcaacttcaatcttgat |
313 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15662272 |
ataacaaagaatctcctaattatttagataaacctgcattcctcgtatttgctttatccgactccatggcacttatctcgtcttcaacttcaatcttgat |
15662173 |
T |
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| Q |
314 |
atttctatccatccttatctcgcgatatgcggagcaagattttctcaagtcactgcctttgaagttgat |
382 |
Q |
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| T |
15662172 |
atttctatccatccttatctcgcgatatgcggagcaagattttctcaagtcactgcctttgaagttgat |
15662104 |
T |
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