View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_low_46 (Length: 393)
Name: NF15745_low_46
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 26723150 - 26723508
Alignment:
| Q |
9 |
agcagagaaccagtaaacgaacccaaccaattgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcagccaa |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26723150 |
agcagaaaaccagtaaacgaacccaaccaactgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcaagcaa |
26723249 |
T |
|
| Q |
109 |
aacacagatatgatttctaaacatattgccttaaaactgcagttttgaaagatctttaaatccacatcaaacttgcccattttggtacagtttaccttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26723250 |
aacacagatatgatttctaaacatattgccttaaaactgcagttttgaaagatctttaaatccacatcaaacttgcccattttggtacagtttaccttta |
26723349 |
T |
|
| Q |
209 |
cgaaggctggtgttcgaactttgttatgtgaattccggcgaagtcgaaagcacgtttgatttgttctgtgtcgggatttgagaaggttttggatgaatga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26723350 |
cgaaggctggtgttcgaactttgttatgtgaattccggcgaagtcgaaagcacgtttgatttgttctatgtcgggatttgagaaggttttggatgaatga |
26723449 |
T |
|
| Q |
309 |
agcttgtgtggaaccacaaatctgagttgttgtttcggtgattttttgttttggatttt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
26723450 |
agcttgtgtggaaccacaaatctgagttgttgtttcggtgatttattgttatgaatttt |
26723508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 14512049 - 14512175
Alignment:
| Q |
9 |
agcagagaaccagtaaacgaacccaaccaattgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcagccaa |
108 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
14512049 |
agcagaaaaccagtaaacaaacccaaccaactgaacgctaaaaactgccgcacagttgggctgtttgtacaccacaccaattccgaacagctgcaaccaa |
14512148 |
T |
|
| Q |
109 |
aacacagatatgatttctaaacatatt |
135 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
14512149 |
aacacgaatatgatttctaaacatatt |
14512175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 14512184 - 14512245
Alignment:
| Q |
297 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgattttttgtt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14512184 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgatttattgtt |
14512245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 3597992 - 3597867
Alignment:
| Q |
10 |
gcagagaaccagtaaacgaacccaaccaattgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcagccaaa |
109 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
3597992 |
gcagaaaaccagtaaacaaacccaatcaactgaaagctaaaaactgccgcacagttgggctgtttgtacaccacaccaattccgaacagctgcaaccaaa |
3597893 |
T |
|
| Q |
110 |
acacagatatgatttctaaacatatt |
135 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
3597892 |
acacggatatgatttctaaacatatt |
3597867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 3597858 - 3597797
Alignment:
| Q |
297 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgattttttgtt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3597858 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgatttattgtt |
3597797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University