View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_48 (Length: 390)
Name: NF15745_low_48
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 1490504 - 1490140
Alignment:
| Q |
19 |
tctggttggcatggtatgacgttaacacaattacttattt-catcaaagatgtagacatcattagaaagatgattattttacacaaaacattcagcacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1490504 |
tctggttggcatggtatgacgttaacacaattacttattttcatgaaagatgtagacatcattagaaagatgattattttacataaaacattcagcacaa |
1490405 |
T |
|
| Q |
118 |
cgaacaataaatggcaaactatcaatttattttaacaccaaatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490404 |
cgaacaataaatggcaaactatcaatttattttaacacctaatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcata |
1490305 |
T |
|
| Q |
218 |
tacgaaaacaaataaataaaccattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1490304 |
tacgaaaacaaataaataaaccattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcctca |
1490205 |
T |
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| Q |
318 |
ctccccataccactaaaactgaatacccttgcactaatcatctctatctaccacttgagtataat |
382 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
1490204 |
ctccccataccactaaaactgaatagccttgcactaatcatctctatctaccacttgagcataat |
1490140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 1514548 - 1514183
Alignment:
| Q |
19 |
tctggttggcatggtatgacgttaacacaattacttattt-catcaaagatgtagacatcattagaaagatgattattttacacaaaacattcagcacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1514548 |
tctggttggcatggtatgacgttaacacaattacttattttcatcaaagatgtaggcatcattagaaagatgattattttacataaaacattcagcacaa |
1514449 |
T |
|
| Q |
118 |
cgaacaataaatggcaaactatcaatttattttaacacca-aatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514448 |
cgaacaataaatggcaaactatcaatttattttaacaccctaatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcat |
1514349 |
T |
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| Q |
217 |
atacgaaaacaaataaataaaccattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcatc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1514348 |
atacgaaaacaaataaataaaccattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcctc |
1514249 |
T |
|
| Q |
317 |
actccccataccactaaaactgaatacccttgcactaatcatctctatctaccacttgagtataat |
382 |
Q |
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| T |
1514248 |
actccccataccactaaaactgaatagccttgcactaatcatctctatctaccacttgagcataat |
1514183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 129 - 332
Target Start/End: Complemental strand, 12122315 - 12122109
Alignment:
| Q |
129 |
tggcaaactatcaatttattttaacaccaa-atgttgctgatagaaataactagggacatccacttttaaaaacggaaaact--cttgcatatacgaaaa |
225 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| ||||||| |||| | |||||||||||| ||||| | ||||| | |||||||||||||||| |
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| T |
12122315 |
tggcaaaccatcaatttattttaacaccctgatgttgccgatagaattaacaacggacatccacttataaaaccagaaaattatcttgcatatacgaaaa |
12122216 |
T |
|
| Q |
226 |
caaataaataaaccattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcatcactccccat |
325 |
Q |
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|| | |||||||| ||||||||||||| |||||||| ||| |||||||||||| ||||||||| |||||||||||||||||| ||| | ||||||| | |
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| T |
12122215 |
caggtcaataaacccttagtcttaagtgaaatatataatccttatattatattatgatgcaaaccaaaattccacatatctctctatcctaactccccgt |
12122116 |
T |
|
| Q |
326 |
accacta |
332 |
Q |
| |
|
||||||| |
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|
| T |
12122115 |
accacta |
12122109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 1530300 - 1530220
Alignment:
| Q |
270 |
tattatattataatgcaaacccaaattccac---atatctctcaatcatcactccccataccactaaaactgaataccctt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||| || |||||||||||||| |
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| T |
1530300 |
tattatattataatgcaaacccaaattcccccccatatctctctatcctcactccccataccagtacaactgaataccctt |
1530220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 557497 - 557610
Alignment:
| Q |
23 |
gttggcatggtatgacgttaacacaattacttattt-catcaaagatgtagacatcattagaaagatgattattttacacaaaacattcagcacaacgaa |
121 |
Q |
| |
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|||||||||||| || | |||| |||||||||||| |||||||||||||| ||||||||||||| ||||| || |||| ||||||| || ||| |
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| T |
557497 |
gttggcatggtaagatataaacataattacttattttcatcaaagatgtagggcgcattagaaagatgtcaattttccataaaat-ttcagcataatgaa |
557595 |
T |
|
| Q |
122 |
caataaatggcaaac |
136 |
Q |
| |
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||||||||||||||| |
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| T |
557596 |
caataaatggcaaac |
557610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 557685 - 557754
Alignment:
| Q |
232 |
aataaaccattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccaca |
301 |
Q |
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|||||||| || |||| |||| ||| ||||| ||| ||| ||||||||| ||| |||||||||||||||| |
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| T |
557685 |
aataaacccttggtctaaagtagaaaatataatccgcatgttatattatgatgaaaacccaaattccaca |
557754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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