View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_49 (Length: 386)
Name: NF15745_low_49
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_49 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 37045197 - 37045580
Alignment:
| Q |
1 |
cattttagaatgcaacaactagaaatacttgccagaatttaggatgtgtggaaatattaaattaaattttctacaggctaaaatttgtttaattgtaaag |
100 |
Q |
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| T |
37045197 |
cattttagaatgcaacaaccagaaatacttgccagaatttaggatgtgtggaaatattaaattaaattttctacaggctaaaatttgtttaattgtaaag |
37045296 |
T |
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| Q |
101 |
caaggaaaacatgtactctatagaaacatttaatttactgcaatatttattaccttaattatacttggatggtttcttttttctgtatttgagaatactg |
200 |
Q |
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| T |
37045297 |
caaggaaaacatgtactctatagaaacatttaatttactgcaatatttattaccttaattatacttggatggtttcttttttctgtatttgagaatactg |
37045396 |
T |
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| Q |
201 |
caaattctccctcaaattggaatgaagctgaatttcgtgtcacatcttcaattttgtggctaagactgtcatacatatcctgcaacaaacacaaaagaca |
300 |
Q |
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| T |
37045397 |
caaattctccctcaaattggaatgaagctgaatttcgtgtcacatcttcaattttgtggctaagattgtcatacatatcctgcaacaaacacaaaagaca |
37045496 |
T |
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| Q |
301 |
aaccattttgcagtacattatattgatgtcataacatcatgtatatccatcattgcagggt-aatattatactacttaccttcattt |
386 |
Q |
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| T |
37045497 |
aaccattttgcagttcactatccttatgtcataacat---gtatatcaacaattgaaggggcaatattattttacttaccttcattt |
37045580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 144 - 386
Target Start/End: Original strand, 37036001 - 37036240
Alignment:
| Q |
144 |
tatttattaccttaattatacttggatggtttcttttttctgtatttgagaatactgcaaattctccctcaaattggaatgaagctgaatttcgtgtcac |
243 |
Q |
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| T |
37036001 |
tatttgttaccttaactatacttggatgatttcttttttctgtattcaggaacactgcatattctccctcaaattggaatgaagttgaatttcgtgtcac |
37036100 |
T |
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| Q |
244 |
atcttcaattttgtggctaagactgtcatacatatcctgcaacaaacacaaaagacaaaccattttgcagtacattatattgatgtcataacatcatgta |
343 |
Q |
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| T |
37036101 |
atcttcaattttgtggctaagattgtcatacatatcctgcaacaaacacaaaagacaaaccattttgcagttcactatctttatgtcataa---catgta |
37036197 |
T |
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| Q |
344 |
tatccatcattgcagggtaatattatactacttaccttcattt |
386 |
Q |
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| T |
37036198 |
tatcaacaattgaagggtaatattatactacttaccttcattt |
37036240 |
T |
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