View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_50 (Length: 375)
Name: NF15745_low_50
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_50 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Original strand, 36691336 - 36691705
Alignment:
| Q |
6 |
cttctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagata |
105 |
Q |
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| T |
36691336 |
cttctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttgggctcaaaagtgttccctagcaagata |
36691435 |
T |
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| Q |
106 |
cactcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatc |
205 |
Q |
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| T |
36691436 |
cactcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatc |
36691535 |
T |
|
| Q |
206 |
ctagtgttgtagtatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaaactctttcannnnnnncttcatctatgcagaa |
305 |
Q |
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| T |
36691536 |
ctagtgttttagtatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaaactctttcatttttttcttcatctatgcagaa |
36691635 |
T |
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| Q |
306 |
accaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatttctgattcgaatcctttg |
375 |
Q |
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| T |
36691636 |
accaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatttctgattcgaatcttttg |
36691705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 23655032 - 23655371
Alignment:
| Q |
18 |
tcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagatacactcggagctt |
117 |
Q |
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| T |
23655032 |
tcctatgtttttttccagatcattattcataaacatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaattt |
23655131 |
T |
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| Q |
118 |
atattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttgtag |
217 |
Q |
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| T |
23655132 |
atattgagatggagcatatgcaagctatgatggaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttag |
23655231 |
T |
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| Q |
218 |
tatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaaactctttcannnnnnncttcatctatgcagaaaccaatcaaggg |
317 |
Q |
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| T |
23655232 |
t---ttctttcagcttatcagatagccttccatttgacatgtattgatacaccaaaattctttcattgtttccttcttctatgctaaaaccaatcaatga |
23655328 |
T |
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| Q |
318 |
aagtatgtttctatgactgtattgtcccaaaatctttatttct |
360 |
Q |
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| T |
23655329 |
aactatgtttctatgactgtattgtcccaaaatcattatttct |
23655371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 23803538 - 23803199
Alignment:
| Q |
18 |
tcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagatacactcggagctt |
117 |
Q |
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||||||||||| | || ||||||||||||||||||| |||||| ||||||||||| || ||||||||| | ||||||| ||||||||| || || || |
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| T |
23803538 |
tcctatgtttttttccagatcattattcataaacatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaattt |
23803439 |
T |
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| Q |
118 |
atattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttgtag |
217 |
Q |
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| T |
23803438 |
atattgagatggagcatatgcaagctatgatggaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttag |
23803339 |
T |
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| Q |
218 |
tatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaaactctttcannnnnnncttcatctatgcagaaaccaatcaaggg |
317 |
Q |
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| || |||| | |||||| || |||||||||| ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||| | |
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| T |
23803338 |
t---ttctttcagcttatcagatagccttccatttgacatgtattgatacaccaaaattctttcattgtttccttcttctatgctaaaaccaatcaatga |
23803242 |
T |
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| Q |
318 |
aagtatgtttctatgactgtattgtcccaaaatctttatttct |
360 |
Q |
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| T |
23803241 |
aactatgtttctatgactgtattgtcccaaaatcattatttct |
23803199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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