View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_51 (Length: 367)
Name: NF15745_low_51
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 41953436 - 41953328
Alignment:
| Q |
1 |
aattgatcaaaacctcgaaacataaacacagaaa-------aaccataacaagtcctaatatcattcaactttcaatcatcagcagcagaaatcacgcta |
93 |
Q |
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| T |
41953436 |
aattgatcaaaacctcgaaacataaacacagaaacaccaaaaaccataacaagtcctaatatcattcaactttcaatcatcagcagcagaaatcacgcta |
41953337 |
T |
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| Q |
94 |
tacagacca |
102 |
Q |
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||||||||| |
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| T |
41953336 |
tacagacca |
41953328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 41953147 - 41953084
Alignment:
| Q |
286 |
attatccaccacgtgaatatatccaaccttgtagccaggaaacgaaagcttcaagccgatctac |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41953147 |
attatccaccacgtgaatatatccaaccttgtagccaggaaacgaaagcttcaagccgatctac |
41953084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 41953262 - 41953203
Alignment:
| Q |
171 |
cccctacgtaaatctgcatgtataatctataatcacaaattttcacctcaacctcggaac |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41953262 |
cccctacgtaaatctgcatgtataatctataatcacaaattttcacctcaacctcggaac |
41953203 |
T |
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