View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_52 (Length: 366)
Name: NF15745_low_52
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_52 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 2156982 - 2156634
Alignment:
| Q |
18 |
actattaccattgcacagaaaacaagttaaaatgaatggattactagattgactaaaatctaaatattgtacaataaataaagatacaaatgctaagaac |
117 |
Q |
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| T |
2156982 |
actattaccattgcacagaaaacaagttaaaatgaatggattactagattgactaaaatctaaatattgtacaataaataaagatacaaatgctaagaac |
2156883 |
T |
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| Q |
118 |
cattgagaaaatgacaagtttaagagtaattggaggttcaataatagacttttagacctaagattctgtgtataaccaaacaggccaaatcaacggtcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2156882 |
cattgagaaaatgacaagtttaagagtaattggaggttcaataatagacttttagacctaagattctgtgtataaccaaacaggccaaatcaacggtcca |
2156783 |
T |
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| Q |
218 |
caatcacttatcaagcccaaacacttgataaaacaaaaataaatccgccacacaattttctgccacgtgtcaaacaatcaacggttagtttctccttaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2156782 |
caatcacttatcaagcccaaacacttgataaaacaaaaataaatccgccacacaattttctgccacgtgtcaaacaatcaacggttagtttctccttaca |
2156683 |
T |
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| Q |
318 |
attttcctgttttgtctttagccttagcctaattgcatgcaattggtct |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2156682 |
attttcctgttttgtctttagccttagcctaattgcatgcaattggtct |
2156634 |
T |
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