View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_55 (Length: 359)
Name: NF15745_low_55
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 38124636 - 38124967
Alignment:
| Q |
1 |
caaagtgtaaattcgagtcctttgttacatgacacaacaatgttgccaagtttttatcgacttcgaacttgatattcaaatattttattccagcatcttc |
100 |
Q |
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| T |
38124636 |
caaagtgtaaattcgagtcctttgttacatgacacaacaatgttgccaagtttttatcgacttcgaacttgatattcaaatattttattccagcatcttc |
38124735 |
T |
|
| Q |
101 |
tatgttcctttgcatgctgtcttgtaaaaatcgagtgataatatcatagcttcataannnnnnn----attcctatgccgacatataaacctgtttttga |
196 |
Q |
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| T |
38124736 |
tatgttcctttgcatgctgtcttgtaaaaatcgagtgataatatcatagcttcataattttttattttattcctatgccgacatataaacctgtttttga |
38124835 |
T |
|
| Q |
197 |
caattattatgttgttgtaacatgtgcaaagaaacaaaaccaaccgagtcttttccataaaaagtaataaaccgtggttatactgacacagttacacttt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124836 |
caattattatgttgttgtaacatgtgcaaagaaacaaaaccaaccgagtcttttccataaaaagtaataaaccgtggttatactgacacagttacacttt |
38124935 |
T |
|
| Q |
297 |
tacactatgggaaaatctagtactttggttca |
328 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38124936 |
tacactatgggaaaatctagtactttggttca |
38124967 |
T |
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