View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_6 (Length: 625)
Name: NF15745_low_6
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 19 - 622
Target Start/End: Original strand, 5318563 - 5319166
Alignment:
| Q |
19 |
tctacaagctctttccttgttggatcttctccaaaagatttaacaattgaagacactgcattgaccatgataggagtactaattgctttaatcttggatg |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
5318563 |
tctactagctctttccttgttggatcttctcctaaagatttaacaattgaagatactgcattgaccataataggagtactaattgctttaatctttgatg |
5318662 |
T |
|
| Q |
119 |
aaacttcagcatatagagaaggacaccaacattgaccgagtggtcctttaagacgaactttgtcattgtcaatacctctaaacttaagaagactaaagaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318663 |
aaacttcagcatatagagaaggacaccaacattgatcgagtggtcctttaagacgaactttgtcattgtcaatacctctaaacttaagaagactaaagaa |
5318762 |
T |
|
| Q |
219 |
atcactccacatttcagcatttttgttctcataaacaccagatcctgaagaaacaagtaacttaacccaccctatatcgtttgagtcgatatctttgtat |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5318763 |
atcactccacatttcagcatttttgttctcataaacaccagatcctgaagaaacaagtaacttaacccaccctatatcgtttgattcgatatctttgtat |
5318862 |
T |
|
| Q |
319 |
ggaaaagggatatgtgtgcattgtagtacaatagcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggct |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5318863 |
ggaaaagggatatgtgtgcattgtagtacaatagcaacaccttctggctctatcccttgatgcaaagcagaacatatctcatctgctaaacgttgaggct |
5318962 |
T |
|
| Q |
419 |
cttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318963 |
cttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttg |
5319062 |
T |
|
| Q |
519 |
aaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaattttattagtatta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5319063 |
aaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaattttattattatta |
5319162 |
T |
|
| Q |
619 |
tcta |
622 |
Q |
| |
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|||| |
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| T |
5319163 |
tcta |
5319166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 382 - 612
Target Start/End: Original strand, 3637476 - 3637706
Alignment:
| Q |
382 |
aaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactcttt |
481 |
Q |
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||||| ||||| | ||| ||||| | ||| |||||||||||||||||||| |||||| ||||||| || | || ||||||||||| || |||||||||| |
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| T |
3637476 |
aaagctgaacacacttcgtctgccagacgctgaggctcttgaagtcgtttagcaaatacttcggcgacacgagagagcttgcttaatccaacaactcttt |
3637575 |
T |
|
| Q |
482 |
ggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtcc |
581 |
Q |
| |
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|||||||||||| ||||| |||||||| |||||||| || |||| ||| ||||| ||||| || || ||||||||||| |||| |||||||||||||| |
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| T |
3637576 |
ggccagaagggacgtaaccgacatgacatttgacttggaaaggtagcaaacaagattcacagtaggaatagaggtcaatgtctcggacaatcacaagtcc |
3637675 |
T |
|
| Q |
582 |
acctactccacctccatgaccaattttatta |
612 |
Q |
| |
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||| | ||||| ||||||| ||||||||| |
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| T |
3637676 |
gcctgcaccaccagcatgaccgattttatta |
3637706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 326 - 593
Target Start/End: Complemental strand, 19100822 - 19100555
Alignment:
| Q |
326 |
ggatatgtgtgcattgtagtacaatagcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaag |
425 |
Q |
| |
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|||| ||||| ||||| |||| || |||||||| ||||||| ||| || ||||||| ||||||||| | ||||| ||| | ||| |||||||||||||| |
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| T |
19100822 |
ggatgtgtgtacattgaagtatgatggcaacaccatctggctttattccatgatgcagagcagaacaaacttcatttgcaagacgctgaggctcttgaag |
19100723 |
T |
|
| Q |
426 |
tcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttgaaatggt |
525 |
Q |
| |
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|| ||||||||| | || ||||| | | || |||||||| || |||||||||| | || || | ||||| |||||||||||||| || ||||| |
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| T |
19100722 |
ccgctttgcaaatacatcagcaacacgggagagtttgcttaaaccaacaactctttcactggagggaacgtaaccgacatgacacttgacctggaatgga |
19100623 |
T |
|
| Q |
526 |
aacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacc |
593 |
Q |
| |
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| || ||| ||||| ||||| || | | |||||||||||| |||||||||||||||||| ||||||| |
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| T |
19100622 |
agcatgcatgactcgcaataggaaaacaagtcaatatctctaacaatcacaagtccacctgctccacc |
19100555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 604
Target Start/End: Complemental strand, 21961312 - 21961060
Alignment:
| Q |
352 |
gcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccc |
451 |
Q |
| |
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|||||| || |||||| ||| || |||||| ||||| |||| | ||||| ||| | ||| |||||||||||||||| ||||||| || || |||| | |
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| T |
21961312 |
gcaacatctgctggctttattccgtgatgcgaagcataacaaacttcatttgcgagacgctgaggctcttgaagtcattttgcagatatatccacaacac |
21961213 |
T |
|
| Q |
452 |
taggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagta |
551 |
Q |
| |
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| || |||||||| || | |||||||| ||||| || | ||||| |||||||||||||| |||||||| | || |||||||| ||||| || | |
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| T |
21961212 |
gggagagtttgcttaaaccgataactctttcaccagagggaacgtaaccaacatgacacttgacctgaaatgggagcacgcaagacttgcaataggaaaa |
21961113 |
T |
|
| Q |
552 |
gaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaa |
604 |
Q |
| |
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| ||||| |||||| |||| |||||||||||| ||||||| ||||||||| |
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| T |
21961112 |
caagtcaagatctctggcaataacaagtccacctgctccaccagcatgaccaa |
21961060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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