View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_low_61 (Length: 328)

Name: NF15745_low_61
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_low_61
NF15745_low_61
[»] chr1 (3 HSPs)
chr1 (1-316)||(31322235-31322552)
chr1 (175-315)||(31321268-31321408)
chr1 (181-311)||(34650747-34650877)
[»] chr5 (6 HSPs)
chr5 (180-313)||(38997568-38997702)
chr5 (188-309)||(28803991-28804111)
chr5 (175-315)||(13163538-13163675)
chr5 (252-316)||(37498547-37498611)
chr5 (220-312)||(37497494-37497585)
chr5 (181-236)||(28804602-28804657)
[»] chr8 (5 HSPs)
chr8 (175-316)||(2687392-2687533)
chr8 (183-234)||(27823712-27823763)
chr8 (251-303)||(27166985-27167037)
chr8 (208-311)||(27824148-27824251)
chr8 (252-297)||(17097344-17097389)
[»] chr7 (5 HSPs)
chr7 (246-315)||(3697875-3697944)
chr7 (182-275)||(3704689-3704782)
chr7 (181-297)||(35711282-35711398)
chr7 (198-283)||(39705007-39705092)
chr7 (175-227)||(28099210-28099262)
[»] chr4 (7 HSPs)
chr4 (199-314)||(8332215-8332330)
chr4 (175-226)||(8331535-8331586)
chr4 (230-303)||(7500711-7500784)
chr4 (203-283)||(7491617-7491697)
chr4 (203-278)||(36139553-36139628)
chr4 (230-303)||(7492680-7492753)
chr4 (203-283)||(7499666-7499746)
[»] chr2 (5 HSPs)
chr2 (186-309)||(12028377-12028499)
chr2 (182-268)||(18160734-18160820)
chr2 (175-260)||(18160636-18160721)
chr2 (182-268)||(18308481-18308567)
chr2 (175-260)||(18159720-18159805)
[»] chr6 (1 HSPs)
chr6 (182-289)||(28636181-28636291)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 31322552 - 31322235
Alignment:
Q  1 tagagtttgatgcatgttgatattagtttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322552 tagagtttgatgcatgttgatattagtttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggat 31322453  T
Q  101 catggggctaggggtgcatacgactaagatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322452 catggggctaggggtgcatacgactaagatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttc 31322353  T
Q  201 ttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcaca- 299  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31322352 ttccatcttcttcgtgtctttcttcctttatttttatcttagtcgcacaccttcaccatttcttctacccatatcctccatttctgctataaattcacat 31322253  T
Q  300 -tatagatcataaaactg 316  Q
     |||||||||||||||||    
T  31322252 atatagatcataaaactg 31322235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 175 - 315
Target Start/End: Original strand, 31321268 - 31321408
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 274  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| ||||||| | ||||||||||||||||| |||||||||||    
T  31321268 aaattaaaatttaaaaaccttggtccttccatctttttcctgtctttcttcctctattttcatcttagccgcacaccttcaccatttcgtctacccatat 31321367  T
Q  275 cctccatttctgctataaattcacatatagatcataaaact 315  Q
    |||||||||||| || || |||||| |||||||||||||||    
T  31321368 cctccatttctgttaaaatttcacagatagatcataaaact 31321408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 34650747 - 34650877
Alignment:
Q  181 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 280  Q
    |||||| |||| |||||||||| |||||  ||| |||||||||| || ||||||||| |||||  |||| ||||||||||||||||||||||| |||  |    
T  34650747 aaattttaaaatcttggttcttacatctatttcatgtctttctttctctatttttattttagttgcacatcttcaccatttcttctacccatacccttta 34650846  T
Q  281 tttctgctataaattcacatatagatcataa 311  Q
    ||||||||| ||||||| | || ||||||||    
T  34650847 tttctgctaaaaattcatagattgatcataa 34650877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 38997568 - 38997702
Alignment:
Q  180 aaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcc 279  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||  ||||| ||||||||| ||||| |||||||||||||||||| ||||||||     
T  38997568 aaaatttaaaaaccttggttcttccatctttttcctgtttttcttcctccattttcatcttagtcgcacacattcaccatttcttctacctatatcctcg 38997667  T
Q  280 atttctgct-ataaattcacatatagatcataaaa 313  Q
    ||||||||| | ||| |||||||||||||||||||    
T  38997668 atttctgctaaaaaaatcacatatagatcataaaa 38997702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 28803991 - 28804111
Alignment:
Q  188 aaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgc 287  Q
    ||||||||| |||||||||||| ||| | ||||||||| |  ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  28803991 aaaaccttgattcttccatctttttcctatctttcttcgtcaattttcatcttagtcgcacaccttcaccatttcttctacccatatcc-ccatttctgt 28804089  T
Q  288 tataaattcacatatagatcat 309  Q
     | ||||||||| | |||||||    
T  28804090 caaaaattcacaaagagatcat 28804111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 13163675 - 13163538
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 274  Q
    ||||| ||||||||||| ||| |||||| || ||| | |||||||||||||||| ||||| | ||||  | ||||||||||| |||| ||||||| ||||    
T  13163675 aaattcaaatttaaaaatcttagttctttca-cttat-cgtgtctttcttccttcattttcaacttaaccgcacaccttcacaattt-ttctacctatat 13163579  T
Q  275 cctccatttctgctataaattcacatatagatcataaaact 315  Q
    ||||||| | ||||| |||||||||||||||||||||||||    
T  13163578 cctccatatttgctaaaaattcacatatagatcataaaact 13163538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 37498611 - 37498547
Alignment:
Q  252 ttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaactg 316  Q
    |||||||||||||||| | || |||||||||| ||||| ||||||||| ||||||||||||||||    
T  37498611 ttcaccatttcttctagctatgtcctccatttatgctaaaaattcacaaatagatcataaaactg 37498547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 37497494 - 37497585
Alignment:
Q  220 ttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaa 312  Q
    ||||||||  ||||| ||||||||  ||||| |||||||||||||||| ||||||| ||||||| ||||| || |||||  ||||||||||||    
T  37497494 ttcttcctccattttcatcttagttgcacactttcaccatttcttctatccatatcatccatttatgcta-aatttcaccgatagatcataaa 37497585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 28804657 - 28804602
Alignment:
Q  181 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttattttta 236  Q
    ||||||||||| ||| ||||||||||||||||  |||||||||||||  |||||||    
T  28804657 aaatttaaaaatcttagttcttccatcttctttttgtctttcttcctccattttta 28804602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 316
Target Start/End: Original strand, 2687392 - 2687533
Alignment:
Q  175 aaattaaaatttaaaaaccttgg-ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccata 273  Q
    ||||| ||||||||||||||||| || ||| |||| ||||  |||||||||| |  ||||| ||||||| | ||||||||||||||||    ||||||||    
T  2687392 aaattcaaatttaaaaaccttgggtttttcaatct-cttccggtctttcttcttccattttcatcttagccgcacaccttcaccattttcaatacccata 2687490  T
Q  274 tcctccatttctgctataaattcacatatagatcataaaactg 316  Q
    |||||||||||||||| ||||||| | ||||||||||||||||    
T  2687491 tcctccatttctgctaaaaattcatacatagatcataaaactg 2687533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 27823712 - 27823763
Alignment:
Q  183 atttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttt 234  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27823712 atttaaaaaccttggttcttccatcttcttcttgtctttcttccttcatttt 27823763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 27167037 - 27166985
Alignment:
Q  251 cttcaccatttcttctacccatatcctccatttctgctataaattcacatata 303  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  27167037 cttcaccatttcttctacccatatcttccatttatgctaaaaattcatatata 27166985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 27824251 - 27824148
Alignment:
Q  208 ttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatc 307  Q
    |||||| ||||||| |||||  ||||||||||| | | ||||| |||||||||| |||||| |||||| || | |||| ||  ||||||||| |||||||    
T  27824251 ttcttcatgtcttttttcctccatttttatctttgccgcacacattcaccatttattctactcatatcttcgaattctactgaaaattcacaaatagatc 27824152  T
Q  308 ataa 311  Q
    ||||    
T  27824151 ataa 27824148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 17097344 - 17097389
Alignment:
Q  252 ttcaccatttcttctacccatatcctccatttctgctataaattca 297  Q
    |||| ||||||||||||||||||||||||||  ||||| |||||||    
T  17097344 ttcaacatttcttctacccatatcctccattcatgctaaaaattca 17097389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 3697875 - 3697944
Alignment:
Q  246 cacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaact 315  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  3697875 cacaccttcactatttattctacccatatcgtccatttctgctaaaaattcacagatagatcataaaact 3697944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 3704689 - 3704782
Alignment:
Q  182 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatc 275  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||  ||||    ||||||  |||||||||| |||||||||||||||||||    
T  3704689 aatttaaaaacattggctcttccatcttcttcatgtctttcttcctccatttcccccttagttgcacaccttcagcatttcttctacccatatc 3704782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 35711398 - 35711282
Alignment:
Q  181 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 280  Q
    |||||||||||| || || |||||||||||||| |||||||||||||   |||| | ||||    || ||||||||| ||||||||| |||| |||||||    
T  35711398 aaatttaaaaacttttgtccttccatcttcttcatgtctttcttcctcccttttcaacttacctgcataccttcaccgtttcttctatccatttcctcca 35711299  T
Q  281 tttctgctataaattca 297  Q
    ||||||||| |||||||    
T  35711298 tttctgctaaaaattca 35711282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 39705092 - 39705007
Alignment:
Q  198 ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 283  Q
    |||||||||| ||||| ||||||||||||   ||||| ||||| | | ||||  ||||||||||||| ||||||||| ||||||||    
T  39705092 ttcttccatcctcttcatgtctttcttccaccattttcatcttggccgcacatattcaccatttcttatacccatattctccattt 39705007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 28099210 - 28099262
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcct 227  Q
    ||||| |||||||||||| ||  || ||||||||||||| |||||||||||||    
T  28099210 aaattcaaatttaaaaacttttatttttccatcttcttcttgtctttcttcct 28099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 8332330 - 8332215
Alignment:
Q  199 tcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcac 298  Q
    |||||||||||||||   | ||||||||| |||||| ||||||| | ||||| |||| ||||||||||| |||||||  |||||||||||| ||||||||    
T  8332330 tcttccatcttcttccaatttttcttcctctattttcatcttagccacacactttcatcatttcttctatccatatcgaccatttctgctaaaaattcac 8332231  T
Q  299 atatagatcataaaac 314  Q
    | |||  |||||||||    
T  8332230 aaatatgtcataaaac 8332215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 8331535 - 8331586
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 226  Q
    ||||| |||||||||||| |||||||||||||||||||  ||||||||||||    
T  8331535 aaattcaaatttaaaaactttggttcttccatcttcttgttgtctttcttcc 8331586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 7500784 - 7500711
Alignment:
Q  230 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatata 303  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||  ||||| |||| ||||||||    
T  7500784 attttcatcttagccgcacatattcactatttcttctacccatatcctccattcatgctaaaaatccacatata 7500711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 7491617 - 7491697
Alignment:
Q  203 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 283  Q
    ||||||||||| | ||||||||||   ||||| ||||||||| ||||  |||||  ||||||||||||||||||| |||||    
T  7491617 ccatcttcttcatatctttcttccaccattttcatcttagtcgcacatattcacagtttcttctacccatatccttcattt 7491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 36139628 - 36139553
Alignment:
Q  203 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctc 278  Q
    ||||||||||| ||||||||||||   ||||| ||||||||| ||||  |||||||||||||| | | ||||||||    
T  36139628 ccatcttcttcatgtctttcttccaccattttaatcttagtcgcacatattcaccatttcttcaatctatatcctc 36139553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 7492753 - 7492680
Alignment:
Q  230 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatata 303  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||  ||||| || | ||||||||    
T  7492753 attttcatcttagccgcacatattcactatttcttctacccatatcctccattcatgctaaaactccacatata 7492680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 7499666 - 7499746
Alignment:
Q  203 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 283  Q
    ||||||||||| ||||||||||||   ||||| |||| || | ||||  |||||  ||||||||||||||||||| |||||    
T  7499666 ccatcttcttcatgtctttcttccaccattttcatctaagccacacatattcacagtttcttctacccatatccttcattt 7499746  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 12028377 - 12028499
Alignment:
Q  186 taaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttct 285  Q
    ||||||| ||| |||||||||||||||| ||||||||| | |  ||||| ||||||| | |||||||| |  ||||||| ||  ||||||||||||||||    
T  12028377 taaaaacattgtttcttccatcttcttcatgtctttctac-tccattttcatcttagccgcacacctttattatttcttataaacatatcctccatttct 12028475  T
Q  286 gctataaattcacatatagatcat 309  Q
    |||| ||||| ||| |||||||||    
T  12028476 gctaaaaatttacaaatagatcat 12028499  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 18160820 - 18160734
Alignment:
Q  182 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 268  Q
    ||||||||||  | |||||||||||||||||| | ||||| ||||   ||||| ||||||| | |||| ||||||||||||||||||    
T  18160820 aatttaaaaatttcggttcttccatcttcttcctatcttttttccaccattttcatcttagccgcacatcttcaccatttcttctac 18160734  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 18160636 - 18160721
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 260  Q
    ||||| ||||||||||   |||||||||||||| ||||| ||||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18160636 aaattcaaatttaaaatttttggttcttccatcatcttcctgtctttcttccaccattttcattgtagtcgcacaccttcaccatt 18160721  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 18308481 - 18308567
Alignment:
Q  182 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 268  Q
    ||||||||||  | |||||||||||||||||| | ||||||||||   ||||| |||||||   |||| ||| ||||||||||||||    
T  18308481 aatttaaaaatttcggttcttccatcttcttcctatctttcttccaccattttcatcttagctgcacatctttaccatttcttctac 18308567  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 18159720 - 18159805
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 260  Q
    ||||| ||||||||||   |||||||||||||| ||||| | ||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18159720 aaattcaaatttaaaatttttggttcttccatcatcttcctatctttcttccaccattttcattgtagtcgcacaccttcaccatt 18159805  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 28636291 - 28636181
Alignment:
Q  182 aatttaaaaaccttggttcttccatcttcttcgt----gtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcct 277  Q
    ||||||||||| |||||| || |||||||||| |    || |||||||||  ||||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  28636291 aatttaaaaacattggttatttcatcttcttcatatatgtatttcttcctccattttcatcttagtctcacaccttcaccatttcttttaccca-atcct 28636193  T
Q  278 ccatttctgcta 289  Q
    |||||| |||||    
T  28636192 ccatttttgcta 28636181  T

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