View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_low_65 (Length: 322)

Name: NF15745_low_65
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_low_65
NF15745_low_65
[»] chr6 (46 HSPs)
chr6 (1-141)||(12164145-12164285)
chr6 (1-141)||(12163887-12164027)
chr6 (193-322)||(12164079-12164208)
chr6 (193-322)||(12163824-12163950)
chr6 (193-322)||(12210867-12210996)
chr6 (1-122)||(12210933-12211054)
chr6 (194-294)||(12211171-12211271)
chr6 (193-293)||(12211272-12211372)
chr6 (202-294)||(12212797-12212889)
chr6 (67-141)||(12163638-12163712)
chr6 (193-290)||(12192338-12192435)
chr6 (67-141)||(12163479-12163553)
chr6 (196-294)||(12212842-12212940)
chr6 (193-294)||(12211122-12211220)
chr6 (67-141)||(12163290-12163364)
chr6 (67-141)||(12210741-12210815)
chr6 (196-294)||(12211224-12211322)
chr6 (193-290)||(12179257-12179354)
chr6 (193-294)||(12179308-12179409)
chr6 (193-294)||(12192389-12192490)
chr6 (214-294)||(12192308-12192388)
chr6 (229-294)||(12179395-12179460)
chr6 (229-294)||(12192476-12192541)
chr6 (229-294)||(12210852-12210917)
chr6 (85-141)||(12163716-12163772)
chr6 (70-141)||(12164313-12164384)
chr6 (85-140)||(12163368-12163423)
chr6 (34-140)||(12163476-12163582)
chr6 (229-287)||(12163809-12163867)
chr6 (193-294)||(12179203-12179307)
chr6 (193-243)||(12192491-12192541)
chr6 (85-134)||(12163209-12163258)
chr6 (91-140)||(12163344-12163393)
chr6 (229-294)||(12164064-12164129)
chr6 (70-119)||(12211098-12211147)
chr6 (85-137)||(12163557-12163609)
chr6 (193-272)||(12179116-12179198)
chr6 (235-294)||(12164358-12164417)
chr6 (193-243)||(12164367-12164417)
chr6 (80-137)||(12179156-12179216)
chr6 (193-243)||(12179410-12179460)
chr6 (79-129)||(12210903-12210953)
chr6 (78-134)||(12163679-12163735)
chr6 (193-221)||(12164337-12164365)
chr6 (79-119)||(12192323-12192363)
chr6 (77-129)||(12210850-12210902)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 46)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 12164145 - 12164285
Alignment:
Q  1 tctcctcctccacccgtctattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttaca 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12164145 tctcctcctccacccgtcaattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttaca 12164244  T
Q  101 agtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12164245 agtacaaatcacctcctcctccagtttacaagtacaaatct 12164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 12163887 - 12164027
Alignment:
Q  1 tctcctcctccacccgtctattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttaca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12163887 tctcctcctccacctgtctattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccaccagtttaca 12163986  T
Q  101 agtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  12163987 agtacaagtcacctcctcccccagtttacaagtacaaatct 12164027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 12164079 - 12164208
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccac 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  12164079 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtcaattcaccacctccac 12164178  T
Q  293 catatacgtacaaatctccaccacctcctc 322  Q
    |||||| |||||||||||||||||||||||    
T  12164179 catataagtacaaatctccaccacctcctc 12164208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 12163824 - 12163950
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccac 292  Q
    |||||||| |||||||| || ||||||||||| |||||||||||   ||||||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  12163824 gtttacaagtataagtctccccctccacctgtctactcaccacc---accagtttacaagtataagtctcctcctccacctgtctattcaccacctccac 12163920  T
Q  293 catatacgtacaaatctccaccacctcctc 322  Q
    |||||| |||||||||||||||||||||||    
T  12163921 catataagtacaaatctccaccacctcctc 12163950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 12210867 - 12210996
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccac 292  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| |  || |||||||||||||    
T  12210867 gtttacaagtataagtctcctcctccacctgtttactcaccacctccaccagtttacaagtataaatctcctcctccaccagtttactcaccacctccac 12210966  T
Q  293 catatacgtacaaatctccaccacctcctc 322  Q
    |||| | |||   |||||||||||||||||    
T  12210967 catacaagtattcatctccaccacctcctc 12210996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12210933 - 12211054
Alignment:
Q  1 tctcctcctccacccgtctattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttaca 100  Q
    |||||||||||||| || || ||||||||||||||||| |||||   |||||||||||||||||| || |||||| ||||||||||||| ||||| ||||    
T  12210933 tctcctcctccaccagtttactcaccacctccaccatacaagtattcatctccaccacctcctccgtacaagtactcatcaccaccaccaccagtctaca 12211032  T
Q  101 agtacaaatcacctcctcctcc 122  Q
    |||| || ||||||||||||||    
T  12211033 agtataagtcacctcctcctcc 12211054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 12211171 - 12211271
Alignment:
Q  194 tttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacc 293  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||  | || |||||||| | ||| ||||||||||||||    
T  12211171 tttacaagtataagtcacctcctccacctgtctactcaccacctccaccagtctacaagtataaatcaccccctccacctgtctactcaccacctccacc 12211270  T
Q  294 a 294  Q
    |    
T  12211271 a 12211271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 293
Target Start/End: Original strand, 12211272 - 12211372
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccac 292  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||| | ||||| ||||| | ||| |||||||||||||    
T  12211272 gtttacaaatataagtcacctcccccacctgtctactcaccaccaccaccagtttacaaatataagtcacctcccccacctgtctactcaccacctccac 12211371  T
Q  293 c 293  Q
    |    
T  12211372 c 12211372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 12212797 - 12212889
Alignment:
Q  202 tataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||| | ||| |||||||||||||||    
T  12212797 tataagtcacctcccccacctgtctactcaccacctccaccagtatacaagtataagtctcctcccccacctgtctactcaccacctccacca 12212889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 12163638 - 12163712
Alignment:
Q  67 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    ||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12163638 tataaatacccatctcccccaccaccagtttacaagtacaaatcacctcctcctccagtttacaagtataaatct 12163712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 12192338 - 12192435
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctcc 290  Q
    |||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||| | || |||||||||| ||| |||||||||||    
T  12192338 gtttacaagtacaagtcaccccctccacctgtctactcaccacctccaccagtttacaagtacaagtccccacctccacccgtctactcaccacctcc 12192435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 12163479 - 12163553
Alignment:
Q  67 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| || || || |||||||||||||||    
T  12163479 tataaatacccatctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatct 12163553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 12212842 - 12212940
Alignment:
Q  196 tacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    ||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| | ||||||||||| |  |  |||||||||||||||    
T  12212842 tacaagtataagtctcctcccccacctgtctactcaccacctccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 12212940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 12211122 - 12211220
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccac 292  Q
    |||||||| ||||| || |||||||||||||| |||||||||||   |||| |||||||||||||| | ||||||||||| | ||| |||||||||||||    
T  12211122 gtttacaagtataaatctcctcctccacctgtctactcaccacc---accaatttacaagtataagtcacctcctccacctgtctactcaccacctccac 12211218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 12163290 - 12163364
Alignment:
Q  67 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    ||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  12163290 tataaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttacaagtataaatct 12163364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 12210741 - 12210815
Alignment:
Q  67 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    |||||||| | ||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  12210741 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatct 12210815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 12211224 - 12211322
Alignment:
Q  196 tacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||| | ||||| ||||| | ||| |||||||| ||||||    
T  12211224 tacaagtataaatcaccccctccacctgtctactcaccacctccaccagtttacaaatataagtcacctcccccacctgtctactcaccaccaccacca 12211322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 12179257 - 12179354
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctcc 290  Q
    |||||||| || |||||||| | |||||| || |||||||||||||||||||||||||| || ||| | || |||||||||| ||| |||||||||||    
T  12179257 gtttacaagtacaagtccccacgtccacccgtttactcaccacctccaccagtttacaactacaagtccccacctccacccgtctactcaccacctcc 12179354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 12179308 - 12179409
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccac 292  Q
    |||||||| || |||||||| |||||||| || |||||||||||||| || ||||||| ||| ||| | || ||||| |||| |||||||||||||||||    
T  12179308 gtttacaactacaagtccccacctccacccgtctactcaccacctcccccggtttacacgtacaagtcaccacctcctcccgtctattcaccacctccac 12179407  T
Q  293 ca 294  Q
    ||    
T  12179408 ca 12179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 12192389 - 12192490
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccac 292  Q
    |||||||| || |||||||| |||||||| || |||||||||||||| || ||||| ||||| ||| | || ||||| |||| |||||||||||||||||    
T  12192389 gtttacaagtacaagtccccacctccacccgtctactcaccacctcccccggtttataagtacaagtcaccacctcctcccgtctattcaccacctccac 12192488  T
Q  293 ca 294  Q
    ||    
T  12192489 ca 12192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 12192308 - 12192388
Alignment:
Q  214 cctccacctgtatactcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||| | || |||||||| | ||| |||||||||||||||    
T  12192308 cctccacctgtctactcaccaccaccaccagtttacaagtacaagtcaccccctccacctgtctactcaccacctccacca 12192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 12179395 - 12179460
Alignment:
Q  229 tcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    |||||||||||||||||||||||||||||| |||||||||| || |  || |||||||||||||||    
T  12179395 tcaccacctccaccagtttacaagtataagtctcctcctcctcctgcttactcaccacctccacca 12179460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 12192476 - 12192541
Alignment:
Q  229 tcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    |||||||||||||||||||||||||||||| |||||||||| || |  || |||||||||||||||    
T  12192476 tcaccacctccaccagtttacaagtataagtctcctcctcctcctgcatactcaccacctccacca 12192541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 12210852 - 12210917
Alignment:
Q  229 tcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |  || |||||||||||||||    
T  12210852 tcaccaccaccaccagtttacaagtataagtctcctcctccacctgtttactcaccacctccacca 12210917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 12163716 - 12163772
Alignment:
Q  85 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  12163716 ccaccaccagtttacaagtataagtcacctcctcccccagtttacaagtacaaatct 12163772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 12164313 - 12164384
Alignment:
Q  70 aagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatct 141  Q
    |||||||||||||||||||| || |||||||| || || || |||||||| |||||||||||||| ||||||    
T  12164313 aagtacccatcaccaccaccacccgtttacaaatataagtcccctcctccaccagtttacaagtataaatct 12164384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 12163368 - 12163423
Alignment:
Q  85 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatc 140  Q
    ||||| ||||||||||||||||||||||||||||| || || |||||||| |||||    
T  12163368 ccaccaccagtttacaagtacaaatcacctcctccaccggtgtacaagtataaatc 12163423  T

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Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 12163476 - 12163582
Alignment:
Q  34 ccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagt 133  Q
    |||||||| |||  |||||||||||| ||   ||| ||||||  |||||| ||||| || || |||||||||||||| ||||| || |||||||||||||    
T  12163476 ccatataaatacccatctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccaccagtttacaagt 12163575  T
Q  134 acaaatc 140  Q
    | |||||    
T  12163576 ataaatc 12163582  T

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Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 12163809 - 12163867
Alignment:
Q  229 tcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacc 287  Q
    |||||||| ||||||||||||||||||||| |||| |||||||| | ||| ||||||||    
T  12163809 tcaccaccaccaccagtttacaagtataagtctccccctccacctgtctactcaccacc 12163867  T

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Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 12179203 - 12179307
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccac---cagtttacaagtataagcctcctcctccacccgactattcaccacctc 289  Q
    |||||||| || |||||||| |||||||| || ||||||||||| ||||   ||||||||||||| ||| | || | ||||||||  || ||||||||||    
T  12179203 gtttacaagtacaagtccccacctccacccgtgtactcaccaccaccaccaccagtttacaagtacaagtccccacgtccacccgtttactcaccacctc 12179302  T
Q  290 cacca 294  Q
    |||||    
T  12179303 cacca 12179307  T

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Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 12192491 - 12192541
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 243  Q
    |||||||| |||||||| |||||||| |||| |||||||||||||||||||    
T  12192491 gtttacaagtataagtctcctcctcctcctgcatactcaccacctccacca 12192541  T

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Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 12163209 - 12163258
Alignment:
Q  85 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagta 134  Q
    ||||| ||||||||||||||||||||||||||||| ||||| || |||||    
T  12163209 ccacctccagtttacaagtacaaatcacctcctccaccagtgtataagta 12163258  T

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Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 12163344 - 12163393
Alignment:
Q  91 ccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatc 140  Q
    |||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  12163344 ccagtttacaagtataaatctcctccaccaccagtttacaagtacaaatc 12163393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 12164064 - 12164129
Alignment:
Q  229 tcaccacctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    |||||||| |||||||||||||| |||||| | ||||||||||| |  || |||||||||||||||    
T  12164064 tcaccaccaccaccagtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 12164129  T

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Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 12211098 - 12211147
Alignment:
Q  70 aagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcc 119  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  12211098 aagtacccatctccaccacccccagtttacaagtataaatctcctcctcc 12211147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 12163557 - 12163609
Alignment:
Q  85 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaa 137  Q
    ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  12163557 ccaccaccagtttacaagtataaatcccctcctccaccagtgtacaagtacaa 12163609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 12179116 - 12179198
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatact---caccacctccaccagtttacaagtataagcctcctcctccacc 272  Q
    ||||||||||| |||||||| |||||||| || ||||   ||||||| ||||||||||||||||| ||| | || ||||||||    
T  12179116 gtttacaaatacaagtccccacctccacccgtctactcaccaccaccaccaccagtttacaagtacaagtccccacctccacc 12179198  T

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Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 12164358 - 12164417
Alignment:
Q  235 cctccaccagtttacaagtataagcctcctcctccacccgactattcaccacctccacca 294  Q
    |||||||||||||||||||||||  ||||||||||||| |   | |||||||||||||||    
T  12164358 cctccaccagtttacaagtataaatctcctcctccacctgttcactcaccacctccacca 12164417  T

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Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 12164367 - 12164417
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 243  Q
    |||||||| ||||| || ||||||||||||||  |||||||||||||||||    
T  12164367 gtttacaagtataaatctcctcctccacctgttcactcaccacctccacca 12164417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 12179156 - 12179216
Alignment:
Q  80 caccaccaccgccagtttacaagtacaaat---cacctcctcctccagtttacaagtacaa 137  Q
    |||||||||| ||||||||||||||||| |   ||||||| || |||||||||||||||||    
T  12179156 caccaccaccaccagtttacaagtacaagtccccacctccaccaccagtttacaagtacaa 12179216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 12179410 - 12179460
Alignment:
Q  193 gtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 243  Q
    |||||||| |||||||| |||||||| ||||  ||||||||||||||||||    
T  12179410 gtttacaagtataagtctcctcctcctcctgcttactcaccacctccacca 12179460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 12210903 - 12210953
Alignment:
Q  79 tcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttac 129  Q
    |||||||| || |||||||||||||| ||||| |||||||| |||||||||    
T  12210903 tcaccacctccaccagtttacaagtataaatctcctcctccaccagtttac 12210953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 12163679 - 12163735
Alignment:
Q  78 atcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagta 134  Q
    |||||| || || |||||||||||||| ||||| ||||| || ||||||||||||||    
T  12163679 atcacctcctcctccagtttacaagtataaatctcctccaccaccagtttacaagta 12163735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 12164337 - 12164365
Alignment:
Q  193 gtttacaaatataagtcccctcctccacc 221  Q
    |||||||||||||||||||||||||||||    
T  12164337 gtttacaaatataagtcccctcctccacc 12164365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 12192323 - 12192363
Alignment:
Q  79 tcaccaccaccgccagtttacaagtacaaatcacctcctcc 119  Q
    ||||||||||| ||||||||||||||||| ||||| |||||    
T  12192323 tcaccaccaccaccagtttacaagtacaagtcaccccctcc 12192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 12210850 - 12210902
Alignment:
Q  77 catcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttac 129  Q
    ||||||||||||| |||||||||||||| || || |||||||| || ||||||    
T  12210850 catcaccaccaccaccagtttacaagtataagtctcctcctccacctgtttac 12210902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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