View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_70 (Length: 313)
Name: NF15745_low_70
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 2255370 - 2255094
Alignment:
| Q |
24 |
ttccactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatggaactgttgacaaggcttcagacacat |
123 |
Q |
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| T |
2255370 |
ttccactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatggaactgttgacaaggcttcagacacat |
2255271 |
T |
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| Q |
124 |
tatatgaaaattcattgaagaaagaagaaggtacaccagatgtggtacatttgacacaccttacaactcctgaatccatatatcaactaagattgggatt |
223 |
Q |
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| T |
2255270 |
tatatgaaaattcattgaagaaagaagaaggtacaccagatgtggtacatttgacacaccttacaactcctgaatccatatatcaactaagattgggatt |
2255171 |
T |
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| Q |
224 |
ttcttccttagcctcctcaccccaatcttctgaatggtacctttatttcatgtggcctttcactttttggtctgttc |
300 |
Q |
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| T |
2255170 |
ttcttccttagcctcctcaccccaatcttctgaatggtacctttatttcatgtggcctttcactttttggtctgttc |
2255094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 2275437 - 2275346
Alignment:
| Q |
27 |
cactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatggaactgttgacaaggcttcaga |
118 |
Q |
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| T |
2275437 |
cactcattgcaccatactcagtttagaacaaactactcactcttcatgccactttatgactacatttatggaacaatggacaaggcttcaga |
2275346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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