View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_75 (Length: 295)
Name: NF15745_low_75
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 24842324 - 24842150
Alignment:
| Q |
17 |
atgaataattattagatgatactaaagtatatttacgtatcacattagtccatttagcccatcgaatagatcttaattaaaaattaatgttgcttgtata |
116 |
Q |
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| T |
24842324 |
atgaataattattagatgatactaaagtatatttacgtatcacattagtccatttagcccatcgaatagatcttaattaaaaatt----ttgcttgtata |
24842229 |
T |
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| Q |
117 |
gtccaaacatggttacctatatttcaataatttta-ttcatatatagctgtttataatagagaaagtgggagagaggac |
194 |
Q |
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| T |
24842228 |
gtccaaacatggttaccaatatttcaataattttatttcatatatagctgttaataatagagagagtgggagagaggac |
24842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 24837453 - 24837285
Alignment:
| Q |
20 |
aataattattagatgatactaaagtatatttacgtatcacattagtccatttagcccatcgaatagatcttaattaaaaattaatgttgcttgtatagtc |
119 |
Q |
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| T |
24837453 |
aataattattagatgatactaaagtatatttacgtatcacattagtccatttagccaatcgaatagatcttaattaaa----aatgttgcttgtatagtc |
24837358 |
T |
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| Q |
120 |
caaacatggttacctatatttcaataa-ttttattcatatatagctgtttataatagagaaagtgggagagag |
191 |
Q |
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| T |
24837357 |
caaacatggttaccaatatttcaataattttttttcatatatagctgtttataatagagagagtgggagagag |
24837285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 24757032 - 24756877
Alignment:
| Q |
19 |
gaataattattagatgatactaaagtatatttacgtatcacattagtccatttagcccatcgaatagatcttaattaaaaattaatgttgcttg----ta |
114 |
Q |
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|||||||||||||||| |||||||||||||| | |||||||||| ||||||| ||||||| | || |||||| ||||| ||||||||||| || |
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| T |
24757032 |
gaataattattagatgttactaaagtatattcatgtatcacatttgtccattcagcccattaagtatatcttacttaaa----aatgttgcttgtaatta |
24756937 |
T |
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| Q |
115 |
tagtccaaacatggttacctatatttcaataatttt--attcatatatagctgtttataa |
172 |
Q |
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|| | |||||||||||||| |||||||||||||||| ||| |||||||||||| |||| |
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| T |
24756936 |
taattcaaacatggttaccaatatttcaataatttttatttcttatatagctgttcataa |
24756877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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