View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_79 (Length: 290)
Name: NF15745_low_79
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33837100 - 33837228
Alignment:
| Q |
1 |
atatacatcattcttagcctataca--tgcacttaatctgaattttacttcaacctataataacccatcactcattcaaccaagtattcagtactctcta |
98 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||| ||||||||||| |
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| T |
33837100 |
atatacttcattcttagcctatacaaatgcacttaatctgaattttaattcaacatataataacccgtcacttattcacccaagtattgagtactctcta |
33837199 |
T |
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| Q |
99 |
taaacaaaatagtcaacttaaactttatt |
127 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33837200 |
taaacaaaatagtcaacttaaactttatt |
33837228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33915654 - 33915782
Alignment:
| Q |
1 |
atatacatcattcttagcctataca--tgcacttaatctgaattttacttcaacctataataacccatcactcattcaaccaagtattcagtactctcta |
98 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||| ||||||||||| |
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| T |
33915654 |
atatacttcattcttagcctatacaaatgcacttaatctgaattttaattcaacatataataacccgtcacttattcacccaagtattgagtactctcta |
33915753 |
T |
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| Q |
99 |
taaacaaaatagtcaacttaaactttatt |
127 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33915754 |
taaacaaaatagtcaacttaaactttatt |
33915782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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