View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_8 (Length: 583)
Name: NF15745_low_8
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 565
Target Start/End: Original strand, 12833318 - 12833870
Alignment:
| Q |
13 |
taattctacttcataattatgaccatcctgggacctttccacactcttcttctttttctttgatgaagagataacacccgcatccccatgatgttgatca |
112 |
Q |
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| T |
12833318 |
taattctacttcataattatgaccatcctcgcacctttccacactcttcttcattttctttgatgaagagataacacccgcatccccatgatgttgatta |
12833417 |
T |
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| Q |
113 |
gataaccattctaaactccatggaccagacaccatcgaccagcctgcctctggatgacaagaactcatacatttacggagtggcatattaatcgacttga |
212 |
Q |
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| T |
12833418 |
gataaccattctaaactccatggaccagacaccatcgaccaacctgcctctggatgacaagaactcatacatttacggagtggcatattaatcggcttga |
12833517 |
T |
|
| Q |
213 |
tcaccttttctttcaaagtctccgcccgtccaacatcagcctgacacctactctctacaataactggcggcgagtcattcatatgagtagcatggccctc |
312 |
Q |
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| T |
12833518 |
tcaccttttctttcaaagtctccactcgtccaacatcagcctgacacctactctctacaacaactggcggcgagtcattcatatgagtagcatggccctc |
12833617 |
T |
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| Q |
313 |
cactaactgaacttccttcagtgtagaacatgtcatttgcgctaataacatagtgtcatctacctttactgtcgactgcaccccactagcaggcctcgcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||| |
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| T |
12833618 |
cactaactgaacttccttcagtgtagaacatgtcttttgcgctaataacatagtgccatctacctttactgtcaattgcaccccactagcaggcctagcc |
12833717 |
T |
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| Q |
413 |
aatgatgccacaatttcggaaacatgaatagcttggtccttggctccgtcaatgagcgaacctttagggtcctccaccgctaactcatcaactaatttct |
512 |
Q |
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| T |
12833718 |
aatgatgccacaatttcggaaacatgaatagcttggtccttggctccctcaatgagcgaacctttaggctcctccaccgctaactcatcgactaatttct |
12833817 |
T |
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| Q |
513 |
tgaccaaagtatcaacatcgttacaagcttccggatccccaggtatatctcat |
565 |
Q |
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| T |
12833818 |
cgaccaaagtatcaacatcgttacaagcttccgggtccccaggtatatctcat |
12833870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 10619028 - 10618990
Alignment:
| Q |
74 |
gatgaagagataacacccgcatccccatgatgttgatca |
112 |
Q |
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| T |
10619028 |
gatgaagagataacgcctgcatccccatgatgttgatca |
10618990 |
T |
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