View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_80 (Length: 289)
Name: NF15745_low_80
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 28753848 - 28754064
Alignment:
| Q |
58 |
aaattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
157 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753848 |
aaattctctcattaataaaataaaggcgagttacgtacatgttttgatatgcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
28753947 |
T |
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| Q |
158 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgta |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753948 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgta |
28754047 |
T |
|
| Q |
258 |
tggaaactgttgataag |
274 |
Q |
| |
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||||||||||||||||| |
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| T |
28754048 |
tggaaactgttgataag |
28754064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 69 - 274
Target Start/End: Original strand, 28749840 - 28750045
Alignment:
| Q |
69 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
168 |
Q |
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|||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749840 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
28749939 |
T |
|
| Q |
169 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749940 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
28750039 |
T |
|
| Q |
269 |
gataag |
274 |
Q |
| |
|
|||||| |
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| T |
28750040 |
gataag |
28750045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 69 - 274
Target Start/End: Original strand, 28739898 - 28740103
Alignment:
| Q |
69 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
168 |
Q |
| |
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|||||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28739898 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgcaaatccacaagcatcaccagcagtgaaaaacc |
28739997 |
T |
|
| Q |
169 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28739998 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
28740097 |
T |
|
| Q |
269 |
gataag |
274 |
Q |
| |
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|||||| |
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| T |
28740098 |
gataag |
28740103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 59 - 274
Target Start/End: Complemental strand, 39943066 - 39942851
Alignment:
| Q |
59 |
aattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagca |
158 |
Q |
| |
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|||||| || ||||||||||||||||| || || ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
39943066 |
aattctatcattaataaaataaaggcgggtcacttacttcctttgataggcttctagaccaaatgtgggaaagtttgtaaatccacaagaatcaccagca |
39942967 |
T |
|
| Q |
159 |
gtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtat |
258 |
Q |
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| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39942966 |
gcgaaaaaccattggaagaaaccccacaagaagctgaaggagaagaactttcccagtgcttttacttgcttctttgctagtttggcaccttctgatgtat |
39942867 |
T |
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| Q |
259 |
ggaaactgttgataag |
274 |
Q |
| |
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|||||||||||||||| |
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| T |
39942866 |
ggaaactgttgataag |
39942851 |
T |
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