View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_low_85 (Length: 270)

Name: NF15745_low_85
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_low_85
NF15745_low_85
[»] chr4 (13 HSPs)
chr4 (157-252)||(1678670-1678765)
chr4 (157-252)||(2802055-2802150)
chr4 (25-112)||(1678541-1678625)
chr4 (20-112)||(2802193-2802282)
chr4 (169-219)||(21606595-21606645)
chr4 (169-213)||(7367561-7367605)
chr4 (169-217)||(27131676-27131724)
chr4 (161-204)||(21886432-21886475)
chr4 (172-210)||(9018880-9018918)
chr4 (161-203)||(21886517-21886559)
chr4 (159-213)||(22402381-22402435)
chr4 (173-211)||(41052607-41052645)
chr4 (169-213)||(25260541-25260585)
[»] chr3 (5 HSPs)
chr3 (167-212)||(2401481-2401526)
chr3 (169-212)||(35335609-35335652)
chr3 (169-213)||(33331951-33331995)
chr3 (159-204)||(651410-651455)
chr3 (169-217)||(36895369-36895417)
[»] chr8 (6 HSPs)
chr8 (169-213)||(16330989-16331033)
chr8 (159-217)||(30921011-30921068)
chr8 (169-211)||(3943758-3943800)
chr8 (169-210)||(9581882-9581923)
chr8 (169-213)||(6501503-6501546)
chr8 (169-209)||(11556955-11556995)
[»] chr6 (13 HSPs)
chr6 (169-213)||(34443051-34443095)
chr6 (168-213)||(8805968-8806013)
chr6 (174-227)||(32862750-32862803)
chr6 (169-217)||(2468476-2468524)
chr6 (161-213)||(4240921-4240973)
chr6 (169-212)||(5663937-5663980)
chr6 (171-217)||(29670903-29670948)
chr6 (168-213)||(7086409-7086454)
chr6 (171-208)||(12630070-12630107)
chr6 (159-211)||(4323105-4323157)
chr6 (169-213)||(8013845-8013889)
chr6 (171-211)||(34406440-34406480)
chr6 (169-217)||(34443439-34443486)
[»] chr7 (1 HSPs)
chr7 (169-215)||(27531846-27531892)
[»] chr5 (5 HSPs)
chr5 (164-209)||(29587683-29587728)
chr5 (169-213)||(26208013-26208057)
chr5 (170-217)||(25734621-25734668)
chr5 (169-210)||(20407905-20407946)
chr5 (169-217)||(39828474-39828521)
[»] chr1 (5 HSPs)
chr1 (169-213)||(33318848-33318892)
chr1 (173-227)||(303693-303747)
chr1 (170-228)||(16567303-16567361)
chr1 (169-247)||(43328475-43328552)
chr1 (171-227)||(45462827-45462881)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 1678670 - 1678765
Alignment:
Q  157 gttagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgttagac 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  1678670 gttagataccgctaataatttgagaaaatgaaagtgattaaatgtaactacatgtgttggtatcttgttggtttctgacaccgacacgtgttagac 1678765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 2802150 - 2802055
Alignment:
Q  157 gttagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgttagac 252  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2802150 gttagataccgctaataatttgggagaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacatatgttagac 2802055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 1678541 - 1678625
Alignment:
Q  25 ctttagaaatctgagaacattttagaccatgaacttaatggtattggtaagagaaaactctattatccaacaataatcataactatga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||    
T  1678541 ctttagaaatctgagaacattttagaccatgaacttaatggtattggtaagagcaaactctattatc---caataatcataactatga 1678625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 2802282 - 2802193
Alignment:
Q  20 aagacctttagaaatctgagaacattttagaccatgaacttaatggtattggtaagagaaaactctattatccaacaataatcataactatga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||   ||||||||||||||||||    
T  2802282 aagacctttagaaatctgagaacattttagaccatgaacttaatggtattgttaagagcagactctattatc---caataatcataactatga 2802193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 21606645 - 21606595
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtat 219  Q
    ||||||||| ||||||| ||||||||||| |||||| ||||||||||||||    
T  21606645 taataatttaagaaaataaaagtgattaagtgtaactacatgtgttggtat 21606595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 7367561 - 7367605
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    |||||||||||||||||||| |||||| || ||||||||||||||    
T  7367561 taataatttgagaaaatgaaggtgattgaacgtaaccacatgtgt 7367605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 27131724 - 27131676
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    ||||||||| |||||||| |||| ||| |||||||||||||||||||||    
T  27131724 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggt 27131676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 21886432 - 21886475
Alignment:
Q  161 gataccgctaataatttgagaaaatgaaagtgattaaatgtaac 204  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||    
T  21886432 gataccggtaataatttgagtaaatgacagtgattaaatgtaac 21886475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 9018918 - 9018880
Alignment:
Q  172 taatttgagaaaatgaaagtgattaaatgtaaccacatg 210  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  9018918 taatttgagaaaatgaaagtaattgaatgtaaccacatg 9018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 21886517 - 21886559
Alignment:
Q  161 gataccgctaataatttgagaaaatgaaagtgattaaatgtaa 203  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||    
T  21886517 gataccggtaataatttgagaaaatgatagtgattgaatgtaa 21886559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 22402381 - 22402435
Alignment:
Q  159 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    |||| |||| |||||| ||||||||||  |||||||| |||||||||||||||||    
T  22402381 tagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtgt 22402435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 41052607 - 41052645
Alignment:
Q  173 aatttgagaaaatgaaagtgattaaatgtaaccacatgt 211  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  41052607 aatttaagaaaatgaaagtaattaaatgtaaccacatgt 41052645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 25260541 - 25260585
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||||| |||||||| |||| |||||||||||||| ||||||    
T  25260541 taataatttaagaaaatggaagtaattaaatgtaaccaaatgtgt 25260585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 2401526 - 2401481
Alignment:
Q  167 gctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtg 212  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||    
T  2401526 gctaataatttgagaaaatcaaagtgattaaatgtaactacatgtg 2401481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 35335609 - 35335652
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtg 212  Q
    |||||||||||||||||||||||||||||||| |||||| ||||    
T  35335609 taataatttgagaaaatgaaagtgattaaatgcaaccacttgtg 35335652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 33331995 - 33331951
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||    
T  33331995 taataatttgagaaaataaaagtgattaaatgtaattacatgtgt 33331951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 651455 - 651410
Alignment:
Q  159 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaac 204  Q
    |||| ||| |||||||| ||||||||||||| ||||||||||||||    
T  651455 tagacaccactaataatatgagaaaatgaaattgattaaatgtaac 651410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 36895369 - 36895417
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    ||||||||||| |||||  |||||||| ||||||| |||||||||||||    
T  36895369 taataatttgataaaatataagtgattgaatgtaatcacatgtgttggt 36895417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 16330989 - 16331033
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  16330989 taataatttaagaaaatgaaaatgattaaatgtaaccacatgtgt 16331033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 30921011 - 30921068
Alignment:
Q  159 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    |||| |||||||||||||| | ||||||||||||||| ||||||| |||||||||||||    
T  30921011 tagacaccgctaataatttta-aaaatgaaagtgattgaatgtaagcacatgtgttggt 30921068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 3943758 - 3943800
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgt 211  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||    
T  3943758 taataatttaagaaaataaaagtgattgaatgtaaccacatgt 3943800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 9581882 - 9581923
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatg 210  Q
    ||||| ||| |||||||||||||||||||||||| |||||||    
T  9581882 taatagtttaagaaaatgaaagtgattaaatgtagccacatg 9581923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 6501503 - 6501546
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||    
T  6501503 taataatttgagagaatgaaa-taattaaatgtaaccacatgtgt 6501546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 11556995 - 11556955
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacat 209  Q
    |||||||||||||||||  |||||||| |||||||||||||    
T  11556995 taataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 34443095 - 34443051
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||    
T  34443095 taataatttgagaaagtgaaagtgattgaatgtaaccacatgtgt 34443051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 8806013 - 8805968
Alignment:
Q  168 ctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||    
T  8806013 ctaataatttgagaaattgaaagtgattgaatgaaaccacatgtgt 8805968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 32862803 - 32862750
Alignment:
Q  174 atttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 227  Q
    |||| ||||||||||||||||| ||||||||||| |||||  ||||||||||||    
T  32862803 atttaagaaaatgaaagtgattgaatgtaaccacgtgtgtcagtatcttgttgg 32862750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 2468524 - 2468476
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    ||||||||| |||||||| |||| ||| |||||||||||||||||||||    
T  2468524 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggt 2468476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 4240973 - 4240921
Alignment:
Q  161 gataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||| ||||||||| |||||||||||||||| |||||||| | |||||||    
T  4240973 gataccgttaataatttaagaaaatgaaagtgatgaaatgtaatcgcatgtgt 4240921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 5663980 - 5663937
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtg 212  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||    
T  5663980 taataatatgataaaatggaagtgattaaatgtaaccacatgtg 5663937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 29670903 - 29670948
Alignment:
Q  171 ataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||    
T  29670903 ataatttgagaaaatgaca-tgattcaatgtaaccacatgtgttggt 29670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 7086409 - 7086454
Alignment:
Q  168 ctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    |||||||||||||||| ||||||||||  |||| ||||||||||||    
T  7086409 ctaataatttgagaaattgaaagtgatggaatgaaaccacatgtgt 7086454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 12630107 - 12630070
Alignment:
Q  171 ataatttgagaaaatgaaagtgattaaatgtaaccaca 208  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  12630107 ataatttgagaaaatgaaagttatttaatgtaaccaca 12630070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 4323105 - 4323157
Alignment:
Q  159 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgt 211  Q
    ||||||| | ||| |||||||||||||  |||||||||||||| |||||||||    
T  4323105 tagatactgataacaatttgagaaaattgaagtgattaaatgttaccacatgt 4323157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 8013889 - 8013845
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||||||| |||||  |||||||| |||||||||||||||||    
T  8013889 taataatttgaaaaaatataagtgattgaatgtaaccacatgtgt 8013845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 34406440 - 34406480
Alignment:
Q  171 ataatttgagaaaatgaaagtgattaaatgtaaccacatgt 211  Q
    ||||||| ||||||||||||||||| |||||||||| ||||    
T  34406440 ataatttaagaaaatgaaagtgattgaatgtaaccatatgt 34406480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 34443486 - 34443439
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    ||||||||||| ||||||||| ||||| ||||||||||||| |||||||    
T  34443486 taataatttga-aaaatgaaaatgattgaatgtaaccacatttgttggt 34443439  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 27531892 - 27531846
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttg 215  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||    
T  27531892 taataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgttg 27531846  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 29587683 - 29587728
Alignment:
Q  164 accgctaataatttgagaaaatgaaagtgattaaatgtaaccacat 209  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||    
T  29587683 accggtaataatttaagaaaatggaagtgattaaatgtaaccacat 29587728  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 26208057 - 26208013
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    ||||||||||||||||| |||||| || |||||||||||||||||    
T  26208057 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgt 26208013  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 25734668 - 25734621
Alignment:
Q  170 aataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    |||||| ||||||||||||||||||||||| |||| |||| |||||||    
T  25734668 aataatatgagaaaatgaaagtgattaaatataactacatttgttggt 25734621  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 20407905 - 20407946
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatg 210  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  20407905 taataatttgaaaaaatgaaagtgattgaatgtaatcacatg 20407946  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 39828474 - 39828521
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 217  Q
    |||||||||||||| |||||| | ||| |||||||||||||||||||||    
T  39828474 taataatttgagaatatgaaa-taattgaatgtaaccacatgtgttggt 39828521  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 33318848 - 33318892
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 213  Q
    |||||| || ||||||||| |||||||||||||||||||||||||    
T  33318848 taataacttaagaaaatgagagtgattaaatgtaaccacatgtgt 33318892  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 303693 - 303747
Alignment:
Q  173 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 227  Q
    ||||||||||||||||||| ||| |||||||||||| ||||  ||||| ||||||    
T  303693 aatttgagaaaatgaaagtaattgaatgtaaccacaagtgtcagtatcgtgttgg 303747  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 16567303 - 16567361
Alignment:
Q  170 aataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggt 228  Q
    |||||||| |||||||| || ||||| |||||||||||||||||  ||||| |||||||    
T  16567303 aataatttaagaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttggt 16567361  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 43328475 - 43328552
Alignment:
Q  169 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgt 247  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||   | || ||||||| || ||||||||| |||||    
T  43328475 taataatttgagaaaatgaaa-taatttaatgtaaccacatgtgtcattgtcgtgttggtgtcggacaccgactcatgt 43328552  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 45462827 - 45462881
Alignment:
Q  171 ataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 227  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||| || ||||||    
T  45462827 ataatttgagaaa-tgaaa-tgattaaatgtaaccacatgtattggtgtcatgttgg 45462881  T

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