View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_97 (Length: 254)
Name: NF15745_low_97
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_97 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 30292512 - 30292282
Alignment:
| Q |
3 |
ttcgttcatactcatagtagcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagc |
102 |
Q |
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| T |
30292512 |
ttcgttcatactcatagtagcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtaggaaagtggaactctagttatagttacaagc |
30292413 |
T |
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| Q |
103 |
taatgccgttttattcattgctcactatgagctatagcttcttagagcgaacaagcataataagcattaaaaagttcccgaaattgaagaaataggctcc |
202 |
Q |
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| T |
30292412 |
taatgccgttttattcattgctcactatgag---------cttagagcatacaagcataataagcattaaaacgttcccgaaattgaagaaataggctcc |
30292322 |
T |
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| Q |
203 |
ctttttctctggcttcgaccttcttccctttccctttgtt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
30292321 |
ctttttctctggcttcgaccttcttccctttccctttgtt |
30292282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 30316003 - 30315782
Alignment:
| Q |
30 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaa-ggtggaactctagttatagttacaagctaatgccgttttattcattgctcact |
128 |
Q |
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| T |
30316003 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcact |
30315904 |
T |
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| Q |
129 |
atgagctatagcttcttagagcgaacaagcataa--------taagcattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcga |
220 |
Q |
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| T |
30315903 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcga |
30315804 |
T |
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| Q |
221 |
ccttcttccctttccctttgtt |
242 |
Q |
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| T |
30315803 |
ccttcttccctttccctttgtt |
30315782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 30305136 - 30304916
Alignment:
| Q |
30 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcacta |
129 |
Q |
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|||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |
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| T |
30305136 |
gaggtggctcaaaacttattcttgattcagttattcatagtagaaaggtggaactctagttatagttacaagataatgccgttttattcatcgctcatta |
30305037 |
T |
|
| Q |
130 |
tgagctatagcttcttagagcgaacaagcataat--------aagcattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgac |
221 |
Q |
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| T |
30305036 |
ttagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgac |
30304937 |
T |
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| Q |
222 |
cttcttccctttccctttgtt |
242 |
Q |
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||||||||||||||||||||| |
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| T |
30304936 |
cttcttccctttccctttgtt |
30304916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30287474 - 30287248
Alignment:
| Q |
18 |
agtagcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttatt |
117 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
30287474 |
agtagcagagaggaggaggcacaaaacttattcttgattaatttattcatagtagaaaggaggaactctagtta------caagataatgccgttttatt |
30287381 |
T |
|
| Q |
118 |
cattgctcactatgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttc |
209 |
Q |
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| || |||| |||||||||||| | |||| ||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||| || |
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| T |
30287380 |
cttttctcattatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtc |
30287281 |
T |
|
| Q |
210 |
tctggcttcgaccttcttccctttccctttgtt |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
30287280 |
tctggcttcgaccttcttccctttccctttgtt |
30287248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 30300338 - 30300124
Alignment:
| Q |
30 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcacta |
129 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || |||| || ||||||||||||| ||||||||| |
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| T |
30300338 |
gaggtggcacaaaacttattcttgattaatttattcatggtggaaaggtggaactctagata------caagatattgccgttttattctctgctcacta |
30300245 |
T |
|
| Q |
130 |
tgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgac |
221 |
Q |
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|||||||| || |||| ||| |||||||||||| |||||||| |||| |||||||||| ||| ||||||||| |||||||||||||| |
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| T |
30300244 |
tgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgac |
30300145 |
T |
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| Q |
222 |
cttcttccctttccctttgtt |
242 |
Q |
| |
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||||||||||||||||||||| |
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| T |
30300144 |
cttcttccctttccctttgtt |
30300124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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