View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_98 (Length: 253)
Name: NF15745_low_98
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_98 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 43895332 - 43895576
Alignment:
| Q |
11 |
tgtgttatacctatatacatgccacaaaagttaaataaattgaataaatatgttcgtaaactaatacggcatattctaaaatttaataaaattagtccgt |
110 |
Q |
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| T |
43895332 |
tgtgttatacctatatacatgccacaaaagttaaataaattgaataaatatgtttgtaaactaatacagcatattctaaaatttaataaaattagtccgt |
43895431 |
T |
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| Q |
111 |
ggacaaaccaaaatactaacatgg--tcggtccactaatannnnnnnnaaggatggtcggtccactaatatttgtcaatctaactttattttttcaaatt |
208 |
Q |
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| T |
43895432 |
ggacaaaccaaaaaactaacatggtctcggtccactaatattttttttaaggatggtcggtccactaatatttgtcaatctaactttattttttcaaatt |
43895531 |
T |
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| Q |
209 |
aggttccaaaatggtagtgacccaaaaaatagactaattacctgg |
253 |
Q |
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| T |
43895532 |
aggttccaaaatggtggtgacccaaaaaatagactaattacctgg |
43895576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 43906991 - 43907030
Alignment:
| Q |
171 |
cactaatatttgtcaatctaactttattttttcaaattag |
210 |
Q |
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| T |
43906991 |
cactaatatttgtcaatctaactctattttttcaaattag |
43907030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 43906676 - 43906720
Alignment:
| Q |
33 |
cacaaaagttaaataaattgaataaatatgttcgtaaactaatac |
77 |
Q |
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| T |
43906676 |
cacaagagttaaataaattgaataaatttgtttgtaaactaatac |
43906720 |
T |
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