View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15746_high_3 (Length: 304)
Name: NF15746_high_3
Description: NF15746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15746_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 31109897 - 31109619
Alignment:
| Q |
12 |
gcatagggtaacatattcttcatcaaaattaaagtacattctcacatcaaataatgttggaggttagtattatagaatatgcctcaaaaccgtggaagct |
111 |
Q |
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| T |
31109897 |
gcatagggtaacatattcttcatcaaaattaaagtacattctcacatcaaataatgttggaggttagtattatagaatatgcctcaaaaccgtggaagct |
31109798 |
T |
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| Q |
112 |
tttcaaacaaactaacaaattagcttccatat--gcctaaaggataaattatcaatcccttaatcctattaatgcattggcggggggaatcaaatgcttg |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31109797 |
tttcaaacaaactaacaaattagcttccatatatgcctaaaggataaattatcaatcccttaatcctattaatgcattggctgggggaatcaaatgcttg |
31109698 |
T |
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| Q |
210 |
tcttttcaatattgaagtttgtaattttgtttataaatttcaacttatctcttactattaggatttaggaattgaattg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31109697 |
tcttttcaatattgaagtttgtaattttgtttataaatttcaacttatctcttactattaggatttaggaattgaattg |
31109619 |
T |
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