View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15746_low_1 (Length: 515)
Name: NF15746_low_1
Description: NF15746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15746_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 28)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 21 - 500
Target Start/End: Original strand, 4846693 - 4847177
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4846693 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
4846792 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4846793 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
4846892 |
T |
|
| Q |
221 |
tcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatag-----acattagttgaaattcgaaacaatttgtc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4846893 |
tcaactgcaattttaagtctcttagtccaatttatgatatttgaattttccactgcatgaaaatagacattacattagttgaaattcgaaacaatttgtc |
4846992 |
T |
|
| Q |
316 |
tttaaaaagaaagcatatgatcattgtacctctgttaatgttataatagtttagttgatgnnnnnnnntgctctttttgaggttaagttttaaaatgcat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4846993 |
tttaaaaagaaagcatatgatcattgtacctctgttaatgttataatagtttagttgatgaaaaaaaatgctctttttgaggttaagttttaaaatgcat |
4847092 |
T |
|
| Q |
416 |
attagtttgaagtactaaatctattatgcatgatcattgttgaccaatgacatatggacaaaatatcaattacctaataaatatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4847093 |
attagtttgaagtactaaatctattatgcatgatcattgttgaccaatgacatatggacaaaatatcaattacctaataaatatt |
4847177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 21 - 500
Target Start/End: Original strand, 4801390 - 4801872
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4801390 |
tagaccaaaatcagcaatcttggcatgtaagttctcatctagtaatatgttggaagacttcaaatctctatgcataataggtggtttacacccattatgc |
4801489 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
220 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4801490 |
agataatccaatcctgaaaatccacactaattaagtgctatgtaagggtactttatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
4801589 |
T |
|
| Q |
221 |
tcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagacattagttgaaattcgaaacaatttgtctttaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4801590 |
tcaactgcaattttaagtctcttagtccagtttaagatatttgaattttccactgcatgaaaatagacatcagttgaaattctaaacaatttgtctttaa |
4801689 |
T |
|
| Q |
321 |
aaagaaagcatatgatcattgtacctctgttaatgttataatagtttagttgatgnnnnnnnntgctctt-----tttgaggttaagttttaaaatgcat |
415 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| || ||| ||||| |||||||||||| |
|
|
| T |
4801690 |
aaa-aaagcatatgatcattgtacctctgttaatgttataatagtttatttgatg-aaaaaaatgatcttcattcttggagtttaagatttaaaatgcat |
4801787 |
T |
|
| Q |
416 |
attagtttgaagtactaaatctattatgcatgatcattgttgaccaatgacatatggacaaaatatcaattacctaataaatatt |
500 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4801788 |
attaccttgaattattaaatctattatgcatgatcattgttgaccaatgacttatggacaaaatatcaattacctaataaatatt |
4801872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 4919582 - 4919842
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| | ||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
4919582 |
tagaccaaaatcagcaatcttggcatgcatgttatcatctagtaatatgttggacggcttcaaatctctatgcataataggtggttggcatccattatgc |
4919681 |
T |
|
| Q |
121 |
agataatccaatcctg-aaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgc |
219 |
Q |
| |
|
|||||||||||||||| |||| ||| | | ||| | ||||||||||| |||| ||||||||| |||| ||||||||||||||||| | |||||| |
|
|
| T |
4919682 |
agataatccaatcctgaaaaattcac----actgagttcaatgtaagggtaggctatacaagaaagaagttgccataaatagtacattaccgtttgctgc |
4919777 |
T |
|
| Q |
220 |
atcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaat |
284 |
Q |
| |
|
|||||||||||| |||||||||| | |||| |||| |||||||||| ||||| ||||||| |||| |
|
|
| T |
4919778 |
atcaactgcaatgttaagtctctcattccattttaagatatttgaagtttccgctgcatgcaaat |
4919842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 4692430 - 4692161
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| |||| |||||| |||| ||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
4692430 |
tagaccaaaatcagcaatctttgcatgcaagttctcatctagtagtatgttagaaggcttcaaatctctatgcataataggtggtttacatccattatgc |
4692331 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
220 |
Q |
| |
|
|||||||||||||||||||| ||| | ||| || || ||||| | |||||||||| || || | ||||| | ||||||||||||||||||| |
|
|
| T |
4692330 |
agataatccaatcctgaaaattcac----acaaagggcaatataaggctgcaaaatgcaagaaatatgtttccataaacaatacattaccatgtgctgca |
4692235 |
T |
|
| Q |
221 |
tcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagacattagt |
294 |
Q |
| |
|
||||||||||| ||||| |||| | |||| |||| |||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
4692234 |
tcaactgcaatcttaagcctctcattccaatttaagatagttgagttttccactgcatgcaaatagacattagt |
4692161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 4740148 - 4739879
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || |||||||| |||| ||||||||||||||| |||||||| ||||| || ||||||||| |
|
|
| T |
4740148 |
tagaccaaaatcagcaatctttgcatgtaagttctcatctagcaatatgtttgaaggcttcaaatctctatgcataataggaggtttacatccattatgc |
4740049 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
220 |
Q |
| |
|
|||||||||||||||||||| ||| | |||| | |||||||||| | |||||||||| || | | ||||| | ||||||||||||||||| |
|
|
| T |
4740048 |
agataatccaatcctgaaaattcac----actaaggggaatgtaagggtgcacaatgcaagaaacatgcttccataaacaatacattaccatgtgctgtg |
4739953 |
T |
|
| Q |
221 |
tcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagacattagt |
294 |
Q |
| |
|
||||||||||| |||| |||| | |||| ||| ||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
4739952 |
tcaactgcaatgctaagcctctcattccaacttaagatatttgaattttccactgcatgagaacatacattagt |
4739879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 4826314 - 4826579
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| ||||| |||||||||||||| | |||||||||||||| | |||||||||||| || ||||||||| |
|
|
| T |
4826314 |
tagaccaaaatcagatatcttggcatgcatgttatcatctagtaatatgttggatggtttcaaatctctatgtaaaataggtggtttacatccattatgc |
4826413 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaag-aaagattttgcaataaatagtacattaccatgtgctgc |
219 |
Q |
| |
|
| |||||||||||||||||| |||| |||| ||| ||||||||||| | ||||||| |||||| | ||||| | ||||||||| |||||||| |
|
|
| T |
4826414 |
atataatccaatcctgaaaattcacactaat----tgcaatgtaagggtacacaatgcaagaaaagatgctatcataaacaatacattaccttgtgctgc |
4826509 |
T |
|
| Q |
220 |
atcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagaca |
289 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4826510 |
atcaactgcaatgttaagtctctcgttccagtttaagatatttgagttttccactgcatgcaaatagaca |
4826579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 4753258 - 4752989
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| |||| |||||| |||| ||| ||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
4753258 |
tagaccaaaatcagcaatctttgcatgcaagttctcatctagtagtatgtttgaaggctttaaatctctatgcataataggtggtttacatccattatgc |
4753159 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
220 |
Q |
| |
|
|||||||||||||||||||| || | |||| || |||||||||| | |||||||||| || ||| ||||| | ||| ||||||||||||| |
|
|
| T |
4753158 |
agataatccaatcctgaaaattgac----actaagggcaatgtaagggtgcacaatgcaagaaacatgctgccataaacaatactttaccatgtgctgtg |
4753063 |
T |
|
| Q |
221 |
tcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagacattagt |
294 |
Q |
| |
|
||||||||||| ||||| |||| | |||| ||| ||||||||||||||| ||||||| |||| | |||||||| |
|
|
| T |
4753062 |
tcaactgcaatgttaagcctctcattccaacttaagatatttgaattttctactgcattaaaacatacattagt |
4752989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 4887223 - 4887476
Alignment:
| Q |
25 |
ccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagat |
124 |
Q |
| |
|
|||||||||| |||||||||||| | | ||||| |||||||||||||| | ||||||||||| || |||||||||||||| || ||||||||||||| |
|
|
| T |
4887223 |
ccaaaatcagaaatcttggcatgcatatcatcatctagtaatatgttggatggtttcaaatctctgtgcataataggtggtttacatccattatgcagat |
4887322 |
T |
|
| Q |
125 |
aatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgcatcaa |
224 |
Q |
| |
|
| |||||||||||||| | | | | |||||| ||||||||||| ||||||||||||||||| ||||| | ||||||||||| ||||||||||| |
|
|
| T |
4887323 |
actccaatcctgaaaattatccacact-aagtgcaatgtaagggtacataatgcaagaaagattttgtcataaacaatacattaccatatgctgcatcaa |
4887421 |
T |
|
| Q |
225 |
ctgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatg |
279 |
Q |
| |
|
||||||| |||||||||| | |||| |||| ||| |||||||||||||||||||| |
|
|
| T |
4887422 |
ctgcaatgttaagtctctcattccaatttaagatctttgaattttccactgcatg |
4887476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 4684452 - 4684191
Alignment:
| Q |
14 |
ctttacctagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcaccc |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| | ||||||||| |||| |||||| |||| ||||||||||||||| || || ||||||||||| || |
|
|
| T |
4684452 |
ctttacttagaccaaaatcagcaatctttgcattcaggttctcatcaagtagtatgtttgaaggcttcaaatctctatgcatgatcggtggtttgcatcc |
4684353 |
T |
|
| Q |
114 |
attatgcagataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||| || ||||||| || | |||||||| | ||| || ||||| | ||||||||| || |
|
|
| T |
4684352 |
attatgcagataatccaatcctgaaaattcac----actaagggcaatgtaagtgtgcacaatgcaagacaaattctgtcataaacaatacattaccttg |
4684257 |
T |
|
| Q |
214 |
tgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatg |
279 |
Q |
| |
|
|||||| ||||||||||| ||||| |||| | |||| |||| |||||| ||||||||||||||||| |
|
|
| T |
4684256 |
tgctgcgtcaactgcaatgttaagcctctcattccaatttaagatattcgaattttccactgcatg |
4684191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 4729396 - 4729127
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||| || |||||||| || | ||||||||||||||| ||||||||||| || || |||||||| |
|
|
| T |
4729396 |
tagaccaaaatcagaaatctttgcatgcaagttctcatctagcaatatgtttgatggcttcaaatctctatgcataataggtggcttacatccattatga |
4729297 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgca |
220 |
Q |
| |
|
|||||||||||||||||||| ||| | |||| || ||||||||| | |||||||||| || ||| ||||| | || |||||||||||||| |
|
|
| T |
4729296 |
agataatccaatcctgaaaattcac----actaagggcaatgtaagggagcacaatgcaagaaacatgctgccataaacaataaattaccatgtgctgtg |
4729201 |
T |
|
| Q |
221 |
tcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagacattagt |
294 |
Q |
| |
|
||||||||||| ||||| |||| | |||| ||| |||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
4729200 |
tcaactgcaatgttaagcctctcattccaacttaagatatttgaattttccactgcatgaaaacatacattagt |
4729127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 22 - 294
Target Start/End: Original strand, 4773203 - 4773479
Alignment:
| Q |
22 |
agaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgca |
121 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||| ||||||||||| |||| |||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
4773203 |
agaccaaaatcagcaatcttggcatgcatgttttcatctagtaatatgtttgaaggtttcaaatctctatgcatagtaggtggtttgcatccattatgca |
4773302 |
T |
|
| Q |
122 |
gataatccaatcctgaaaacccacaataattaagtgctatgtaagggtaatctatgcaagaaagattttgcaataaatagtac--------attaccatg |
213 |
Q |
| |
|
||||||||||||||| ||| | || | ||| ||| |||||||| | | |||||||||||| | | ||||||| ||| |||||| || |
|
|
| T |
4773303 |
gataatccaatcctgcaaaacaac----actaaatgcaatgtaaggatgcacaatgcaagaaagacgattctataaataatacattaattaattaccgtg |
4773398 |
T |
|
| Q |
214 |
tgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagacattagt |
294 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||| |||| ||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4773399 |
tgctgcatcaactgcaatgttaagtctctcattccaatttaacatatttgaattttccactgcatgcaaataggcattagt |
4773479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 4719318 - 4719202
Alignment:
| Q |
24 |
accaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcaga |
123 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
4719318 |
accaaaatcagcaatctttgcatgaaaattctcatctagtagtatgttggaaggcttcaaatctctatgcataataggtggtttacatccattatgcaga |
4719219 |
T |
|
| Q |
124 |
taatccaatcctgaaaa |
140 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4719218 |
taatccaatcctgaaaa |
4719202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 4709139 - 4709020
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||| |||| ||||||||||| ||||||||||||||| || ||||||||||| || ||||||||| |
|
|
| T |
4709139 |
tagaccaaaatcagcaatctttgcatgaaagttcttatcaagtagtatgttggaaggcttcaaatctctatgcatgataggtggtttacatccattatgc |
4709040 |
T |
|
| Q |
121 |
agataatccaatcctgaaaa |
140 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4709039 |
agataatccaatcctgaaaa |
4709020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 4791063 - 4791188
Alignment:
| Q |
21 |
tagaccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgc |
120 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || || |||| ||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
4791063 |
tagaccaaaatcagcaatctttgcatgcaagttttcgtctagtagtatgttggaaggcttcaaatctctatgcataataggtggtttacatccattatgt |
4791162 |
T |
|
| Q |
121 |
agataatccaatcctgaaaacccaca |
146 |
Q |
| |
|
| |||||||||||||||||| ||||| |
|
|
| T |
4791163 |
aaataatccaatcctgaaaatccaca |
4791188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 4897760 - 4897875
Alignment:
| Q |
25 |
ccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagat |
124 |
Q |
| |
|
||||||||||| ||||||||||| | |||| || ||||||||||||| || |||| |||||||||| ||||||||||| || || ||||||||||||| |
|
|
| T |
4897760 |
ccaaaatcagcgatcttggcatgcatattctggtctagtaatatgttggtaggcttcgaatctctatgcataataggtggattacatccattatgcagat |
4897859 |
T |
|
| Q |
125 |
aatccaatcctgaaaa |
140 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
4897860 |
attccaatcctgaaaa |
4897875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 21436640 - 21436755
Alignment:
| Q |
25 |
ccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagat |
124 |
Q |
| |
|
||||||||||| |||||||| || | |||||||| ||||||||||||| | ||||||||||||||| ||||| | |||||| || ||||||||||||| |
|
|
| T |
21436640 |
ccaaaatcagctatcttggcttgcatattctcatctagtaatatgttggtaagcttcaaatctctatgcataattgctggtttacatccattatgcagat |
21436739 |
T |
|
| Q |
125 |
aatccaatcctgaaaa |
140 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
21436740 |
attccaatcctgaaaa |
21436755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 4791424 - 4791514
Alignment:
| Q |
194 |
ataaatagtacattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaat |
284 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| || ||||||| ||||||||| | || ||||||||||||||||||||| |||| |
|
|
| T |
4791424 |
ataaatagtacattaccatatgctgtatcaactgcaatgttgagtctctcagtccagttcaagacatttgaattttccactgcatgcaaat |
4791514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 4910009 - 4910121
Alignment:
| Q |
28 |
aaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagataat |
127 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||||| || |||||||||||| || ||||||| |||||| || |||||||||||||| | |
|
|
| T |
4910009 |
aaatcagctatcttggcatgcttattctcgtctagtaatatgttggtaggcttcaaatctctgtgcataatagctggtttacatccattatgcagatatt |
4910108 |
T |
|
| Q |
128 |
ccaatcctgaaaa |
140 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4910109 |
ccaatcctgaaaa |
4910121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 10450702 - 10450574
Alignment:
| Q |
25 |
ccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagat |
124 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| || ||||||||||||| || ||||||||| ||||| ||||| |||||||| || |||| ||| |||| |
|
|
| T |
10450702 |
ccaaaatcagctatcttggcatgcatattctcgtctagtaatatgttggcaggcttcaaatccctatgcataatcggtggtttacatccatcatgtagat |
10450603 |
T |
|
| Q |
125 |
aatccaatcctgaaaacccacaataatta |
153 |
Q |
| |
|
| |||||||||||||| ||| || ||||| |
|
|
| T |
10450602 |
attccaatcctgaaaatccaaaagaatta |
10450574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 10455128 - 10455000
Alignment:
| Q |
25 |
ccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagat |
124 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| || ||||||||||||| || ||||||||| ||||| ||||| |||||||| || |||| ||| |||| |
|
|
| T |
10455128 |
ccaaaatcagctatcttggcatgcatattctcgtctagtaatatgttggcaggcttcaaatccctatgcataatcggtggtttacatccatcatgtagat |
10455029 |
T |
|
| Q |
125 |
aatccaatcctgaaaacccacaataatta |
153 |
Q |
| |
|
| |||||||||||||| ||| || ||||| |
|
|
| T |
10455028 |
attccaatcctgaaaatccaaaagaatta |
10455000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 4870087 - 4870202
Alignment:
| Q |
25 |
ccaaaatcagcaatcttggcatgtaagttctcatcgagtaatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagat |
124 |
Q |
| |
|
||||||||||| || ||||| || | || ||||| | |||||||||||||| ||||| ||||||||| ||||||||| | || ||||||||||| |||| |
|
|
| T |
4870087 |
ccaaaatcagctattttggcctgcatattatcatctaataatatgttggaaggcttcatatctctatgcataataggtagattacacccattatgaagat |
4870186 |
T |
|
| Q |
125 |
aatccaatcctgaaaa |
140 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
4870187 |
actccaatcctgaaaa |
4870202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 4910180 - 4910240
Alignment:
| Q |
203 |
acattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| | |||| |||| ||||||| |
|
|
| T |
4910180 |
acattaccatgtgctgcatcaactgcaatttttagtctctcattccattttaaaatatttg |
4910240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 4870266 - 4870321
Alignment:
| Q |
205 |
attaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | |||| |||| ||||| |
|
|
| T |
4870266 |
attaccatgtgctgcatcaactgcaattttgagtctctcattccattttaagatat |
4870321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 4897936 - 4897994
Alignment:
| Q |
205 |
attaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | |||| |||| || ||||| |
|
|
| T |
4897936 |
attaccatgtgctgcatcaactgcaattttgagtctctcattccattttaagacatttg |
4897994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 10450339 - 10450277
Alignment:
| Q |
201 |
gtacattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttg |
263 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| | |||| || | |||||||| |
|
|
| T |
10450339 |
gtacattaccatgtgctgcatcaaccgcaattttgagtctctcattccatttcaagatatttg |
10450277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 10454765 - 10454703
Alignment:
| Q |
201 |
gtacattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttg |
263 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| | |||| || | |||||||| |
|
|
| T |
10454765 |
gtacattaccatgtgctgcatcaaccgcaattttgagtctctcattccatttcaagatatttg |
10454703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 4719144 - 4719052
Alignment:
| Q |
202 |
tacattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttgaattttccactgcatgaaaatagacattagt |
294 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||| |||| | |||| ||| |||||||||||||| |||||| | ||| | |||||||| |
|
|
| T |
4719144 |
tacattaccatgggctgtgtcaactgcaatgttaagcctctcattccaacttaggatatttgaattttttactgcaagcaaacatacattagt |
4719052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 21436814 - 21436874
Alignment:
| Q |
203 |
acattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttatgatatttg |
263 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||| | |||| |||| || ||||| |
|
|
| T |
21436814 |
acattaccatatgctgcatcaactgcgattttgagtctctcattccattttaagacatttg |
21436874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 43167341 - 43167281
Alignment:
| Q |
75 |
agacttcaaatctctatgaataataggtggtttgcacccattatgcagataatccaatcct |
135 |
Q |
| |
|
|||||| | ||||||||||| ||| ||||| ||||| |||| ||||||||| ||||||||| |
|
|
| T |
43167341 |
agacttaacatctctatgaacaattggtggattgcaaccatgatgcagatactccaatcct |
43167281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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