View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15746_low_3 (Length: 491)
Name: NF15746_low_3
Description: NF15746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15746_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 16684431 - 16684892
Alignment:
| Q |
18 |
cttaaaagatctcaattttatcagacagaacttgaaaattttgaaatggattccaaaattttctatcacaattttatagtgaaacaatgcagaaaaagat |
117 |
Q |
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| T |
16684431 |
cttaaaagatctcaattttataagatagaacttgaaaactttgaaatggattccaaaaagttctatcacagttttatagtgaaacaatgcagaaaaaaat |
16684530 |
T |
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| Q |
118 |
--cctttaacgaatatattttgaagcattatagataaaatgtcaataatgaagaaaatcggtgtataactgaactcttgagacatacacaacaaatgtta |
215 |
Q |
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| T |
16684531 |
atcctttatccgatatattttgaagcattagagataaaatgttaataatgaagaaaatcggtgtataactgaactcttgagacatacacaacaaatgtta |
16684630 |
T |
|
| Q |
216 |
tatagcttacctggattatcttcttgcaaatgctgaagctcaaactttcctcgagtgcccgatcactcgtacgcatccttcctgcaagcctccctgaagt |
315 |
Q |
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| T |
16684631 |
tatagcttacctggattatcttcttgcaaatgctgaagctcaaactttcctcgagtgcccgatcactcgtacgcatccttcctgcaagcctccctgaagt |
16684730 |
T |
|
| Q |
316 |
aactgaggtctctgattcagaattactgctattgatccctatgtcaaatctaacatgcacatcaccgctagacgagcttggtctccaagttgcatatcca |
415 |
Q |
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| T |
16684731 |
aactgaggtctctgattcagaattactgctattgatccctatgtcaaatctaacatgcacatcaccgttagacgagcttggtctccaagttgcatatcca |
16684830 |
T |
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| Q |
416 |
tgttcactccttcctcgacttccagattctgcgaaaacttgaaacacaagaatccctccccc |
477 |
Q |
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| T |
16684831 |
ggttcactccttcctcgacttccagattctgccaaaacttgaaacacaagaatccctccccc |
16684892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 32790326 - 32790233
Alignment:
| Q |
347 |
ttgatccctatgtcaaatctaacatgcacatcaccgctagacgagcttggtctccaagttgcatatccatgttcactccttcctcgacttccag |
440 |
Q |
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||||||||||| |||||||||| || |||||||||||||| |||||||||||||| ||||| |||| | |||| |||| ||| ||||||||| |
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| T |
32790326 |
ttgatccctatctcaaatctaatatttacatcaccgctagatgagcttggtctccaggttgcccatcctttttcattcctcccttgacttccag |
32790233 |
T |
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