View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15746_low_5 (Length: 319)
Name: NF15746_low_5
Description: NF15746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15746_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 4282055 - 4281765
Alignment:
| Q |
17 |
gtttctaacttctatttcccatcatatggatatattcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtgttctct |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4282055 |
gtttctaacttctatttcccaacatatggatatagtcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtgttctct |
4281956 |
T |
|
| Q |
117 |
ggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagtttaagt |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4281955 |
ggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcac----atgtgtcataaagtttaagt |
4281860 |
T |
|
| Q |
217 |
tacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatatc |
311 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281859 |
tacgctactagtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatatc |
4281765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 18974043 - 18974339
Alignment:
| Q |
17 |
gtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtg |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||| ||| ||||||||||||| |||||||||| |
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| T |
18974043 |
gtttctaacttctatttcccaacatatggatattgccgtattcatattagactttcttgtccctcttttggggtggaattcttaattgataaacatagtg |
18974142 |
T |
|
| Q |
111 |
ttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagt |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
18974143 |
ttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcac----atgtgtcataaagt |
18974238 |
T |
|
| Q |
211 |
ttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatat |
310 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18974239 |
ttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctaatactagttttcatat |
18974338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 31709804 - 31710098
Alignment:
| Q |
17 |
gtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtg |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
31709804 |
gtttctaacttctatttcccaacatatggatattgccgtattcatattagactttcttatccctctattggagtaaaattcttaattgacaaacattgtg |
31709903 |
T |
|
| Q |
111 |
ttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagt |
210 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| || |
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| T |
31709904 |
ttctctggcatttatttgactatgtgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttt-aactgcacatgtat----cataa-gt |
31709997 |
T |
|
| Q |
211 |
ttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatat |
310 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31709998 |
ttaagttacgctattagtttttaactcactcaactaaagcaagattattgtttacgtgatatacaatgcccaatatttaatctactactagttttcatat |
31710097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 311
Target Start/End: Original strand, 14674323 - 14674492
Alignment:
| Q |
138 |
atatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagttt-aagttacgctactggtttttaact |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||| |||||| || |||| ||||| |||||||||| |
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|
| T |
14674323 |
atatacagatgctttcgtaaattattcatcgcatgcttgggttttt-aactgcacat----gtgtcattaagttttaacttacactactagtttttaact |
14674417 |
T |
|
| Q |
237 |
cactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatatc |
311 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14674418 |
cactcaactaaagcgagattattgtttacgtgatacgtaatgcccaatatttaatctactactagttttcatatc |
14674492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 14674152 - 14674272
Alignment:
| Q |
17 |
gtttctaacttctatttcccatcatatggata------tattcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtg |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14674152 |
gtttctaacttctatttcccaacatatggatactgccgtattcatattagactttcttatccctctattggagtaaaattcttaattgacaaacatagtg |
14674251 |
T |
|
| Q |
111 |
ttctctggcagttatttgact |
131 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
14674252 |
ttctctggcatttatttgact |
14674272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 19807660 - 19807365
Alignment:
| Q |
17 |
gtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtg |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
19807660 |
gtttctaacttctatttcccaacatatggatattgccgtattcattttagactttcttgtccctctattggggtgaaattcttaattgataaacatagtg |
19807561 |
T |
|
| Q |
111 |
ttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagt |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19807560 |
ttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcac----atgtgtcataaagt |
19807465 |
T |
|
| Q |
211 |
ttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatat |
310 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19807464 |
ttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacttgatatacaatgcccaatatttaatctaatactagttttcatat |
19807365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 12208328 - 12208164
Alignment:
| Q |
17 |
gtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtg |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
12208328 |
gtttctaacttctatttcccaacatatggatattgccgtattcatattagactttcttatccctctatttgagtaaaattcttaattgacaaacatagtg |
12208229 |
T |
|
| Q |
111 |
ttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgctt |
175 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12208228 |
ttctctggcatttatttgactatgtgcatatacagatgctttcgtaatttattcatcgcatgctt |
12208164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 5331831 - 5331535
Alignment:
| Q |
17 |
gtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtg |
110 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
5331831 |
gtttctaacttctatttcccaacatatgcatattgccgtattcatattagactttcttgtccctcttttggggtgaaattcttaattgataaacatagtg |
5331732 |
T |
|
| Q |
111 |
ttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagt |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5331731 |
ttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcac----atgtgtcataaagt |
5331636 |
T |
|
| Q |
211 |
ttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatat |
310 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5331635 |
ttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacgtgatatacaatgccccatatttaatctaatactagttttcatat |
5331536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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