View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15747_high_3 (Length: 293)
Name: NF15747_high_3
Description: NF15747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15747_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 20024013 - 20023818
Alignment:
| Q |
1 |
taatcgaattcgagggcactgcttatcatttcccaaataattataagacctcatgatcatttcaatgaacatatcactctcactattcattccttgttca |
100 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20024013 |
taattgaattcgggggcactgcttatcatttcccaaataattataagacctcatgatcatttcaatgaacatatcactcgcactattcattccttgttca |
20023914 |
T |
|
| Q |
101 |
tttaaagcatgcctaaacttattaaaatttgaagatatatttgaaattggatataattgtatgagataaatttctatgcattgtgagtataacatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20023913 |
tttaaagcatgcctaaacttattaaaatttgaagatatatttgaaattgaatataattgtatgagataaatttctatgcattgtgagtataacatt |
20023818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 18764559 - 18764384
Alignment:
| Q |
23 |
ttatcatttcccaaataattataagacctcatgatcatttcaatgaacatat--cactctcactattcattccttgttcatttaaagcatgcctaaactt |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
18764559 |
ttatcattttccaaataattataagacctcatgatcatttcaatgaacatatatcactctcactattgattccttgatcatttaaagcatgcctaaactt |
18764460 |
T |
|
| Q |
121 |
attaaaatttgaagatatatttgaaattggatataattgtatgagataaatttctatgcattgtgagtataacatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18764459 |
tttaaaatttgaagatatatttgaaattggatataattatatgagataaatttctatgcattgtgagtataacatt |
18764384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 20023356 - 20023306
Alignment:
| Q |
243 |
gaatagtgtaccccttccttctgcgaacaacgaccattttctagtagaaca |
293 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20023356 |
gaatagtgtactccttccttctgcgaacaacgaccattttctagtagaaca |
20023306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 20023305 - 20023268
Alignment:
| Q |
205 |
aataagtatttgaagcatgatatatataaacaaacaat |
242 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
20023305 |
aataaatatttgaagcatgatatatataaacaatcaat |
20023268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 21113277 - 21113326
Alignment:
| Q |
36 |
aataattataagacctc-atgatcatttcaatgaacatatcactctcact |
84 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
21113277 |
aataattataggacctcgatgatcatttcaatgaacatctcacactcact |
21113326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 23218689 - 23218738
Alignment:
| Q |
36 |
aataattataagacctc-atgatcatttcaatgaacatatcactctcact |
84 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |||| ||||||||||| |
|
|
| T |
23218689 |
aataattataagacctcgatgatcatttgaatggacatctcactctcact |
23218738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 46124595 - 46124647
Alignment:
| Q |
36 |
aataattataagacctc-atgatcatttcaatgaacatatcactctcactatt |
87 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |||| ||||||||| |
|
|
| T |
46124595 |
aataattataagacctcgatgatcattttgatgaacatctcacactcactatt |
46124647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University