View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15747_low_2 (Length: 462)
Name: NF15747_low_2
Description: NF15747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15747_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 38328306 - 38327868
Alignment:
| Q |
11 |
agcacagacatcacctagaattttttgttgttgttgatagaaacatgccaccttagatgttactcaacaatcaacatatccattccttcgggtatgagta |
110 |
Q |
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| T |
38328306 |
agcacagacatcacctaggattttttgttgttgttgatagaaacatgccaccttagatgttactcaacaatcaacatatccattccttcgggtatgagta |
38328207 |
T |
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| Q |
111 |
ctatcaccattccaaatgtctgatttgtttgattttgaaccagaagtgagaatatgaacacggttaatatatatcatatattcatccttttttgagtagt |
210 |
Q |
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| T |
38328206 |
ctatcaccattccaaatgtctgatttgtttgattttgaaccagaagtgagaatatgaacacggttaat---------atattcatccttttttgagtagt |
38328116 |
T |
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| Q |
211 |
ataagtatcacttttttcttttgactaatggaatataattacttttgtcacccaataaattacttactattaaattnnnnnnnnnnnnnnnnnnnggcat |
310 |
Q |
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| T |
38328115 |
ataagtatcacttttttcttttgactaatggaatataattacttttgtcacccaataaattacttactattaaattagaaaaagaaaaagaaagaggcat |
38328016 |
T |
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| Q |
311 |
gtatcgtgtggacaagatactannnnnnnnncttaggaaagaaagtgtactacttttgtcatccttttgagtagtataatattattacgtacttctcagt |
410 |
Q |
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| T |
38328015 |
gtatcgtgtggacaagttactatttttttttcttaggaaagaaagtgtactacttttgtcatccttttgagtagtataatattattacgtacttctcagt |
38327916 |
T |
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| Q |
411 |
tcttgtgttatggcagtattactcaattatactactattatatatggc |
458 |
Q |
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| T |
38327915 |
tcttgtgttatggcagtattactcaattatactactattatatgtggc |
38327868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 38330061 - 38330021
Alignment:
| Q |
23 |
acctagaattttttgttgttgttgatagaaacatgccacct |
63 |
Q |
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| T |
38330061 |
acctagaattttttgttcttgttgctagaagcatgccacct |
38330021 |
T |
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