View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15747_low_3 (Length: 354)
Name: NF15747_low_3
Description: NF15747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15747_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 3 - 337
Target Start/End: Original strand, 44691737 - 44692071
Alignment:
| Q |
3 |
accaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtcatcctggtgctatgttatt |
102 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44691737 |
accaaatcttcatgccattccatgcttatcaatcacatggatatactttctctttggccaggataatttttattaggtatcatcctggtgctatgttatt |
44691836 |
T |
|
| Q |
103 |
ttgattcctatatattttcttaactatggttatctctttctctagcattcgccactttcagtactctatgatactccgtgcattgttctcaaatttttcc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44691837 |
ttgattcctatatattttcttaactatggttatctctttctctagcattcgccactttcagtactctatgatactccgtgcattgttctaaaatttttcc |
44691936 |
T |
|
| Q |
203 |
atggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggcaaacaagg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44691937 |
atggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggcaaacaagg |
44692036 |
T |
|
| Q |
303 |
caaacgatgcattttacaaacttagcaacacaagg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44692037 |
caaacgatgcattttacaaacttagcaacacaagg |
44692071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 44631785 - 44631928
Alignment:
| Q |
195 |
atttttccatggaataaatgttgatttgttt-aatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttgg |
293 |
Q |
| |
|
||||||| || |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44631785 |
atttttcgattgaattaatgttgattggttttaatatttatttgcttgcaggataatgtctttgtcaacgttgttgcttctattcaataccgtgccttgg |
44631884 |
T |
|
| Q |
294 |
caaacaaggcaaacgatgcattttacaaacttagcaacacaagg |
337 |
Q |
| |
|
|| ||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
44631885 |
cagacaaggctaatgaggcattttacaaacttagcaacacaagg |
44631928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 336
Target Start/End: Original strand, 44653240 - 44653393
Alignment:
| Q |
180 |
gtgcattgttctcaaatttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattca |
279 |
Q |
| |
|
||||||| | |||| |||||||||| |||| | ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44653240 |
gtgcattttcctcacatttttccattgaatcagtgttgatttgttttaa---tatttgcttgcaggataacgtctttgtcaatgttgttgcttctattca |
44653336 |
T |
|
| Q |
280 |
ataccgtgccttggcaaacaaggcaaacgatgcattttacaaacttagcaacacaag |
336 |
Q |
| |
|
|||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
44653337 |
ataccgggccttggcagacaaggcgaatgatgcattttacaaacttagcaacacaag |
44653393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 44637114 - 44636973
Alignment:
| Q |
196 |
tttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggca |
295 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
44637114 |
tttttccaatgaattaatgttgattggtttaatatttatttgcttgtaggataatgtctttgtgaacgtcgttgcttctattcaataccgtgccttggca |
44637015 |
T |
|
| Q |
296 |
aacaaggcaaacgatgcattttacaaacttagcaacacaagg |
337 |
Q |
| |
|
|||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
44637014 |
gacaacgccaatgatgcattttacaaacttagtaacacaagg |
44636973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 44682304 - 44682402
Alignment:
| Q |
238 |
cttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggcaaacaaggcaaacgatgcattttacaaacttagcaacacaag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
44682304 |
cttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggcagacaaggctaatgatgcattttacaaacttagcaacacaag |
44682402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 44631639 - 44631713
Alignment:
| Q |
68 |
atttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttc |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
44631639 |
atttttattaggtgtcatcctggtgctatgttattttgatttctatatgttttcttaactatggttatctctttc |
44631713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 44682057 - 44682193
Alignment:
| Q |
1 |
aaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtcatcctggtgctatgtta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | | ||||||||| | |||| ||||| || || |||| |||||||||||| |||||||| |
|
|
| T |
44682057 |
aaaccaaatcttcatgtcattccatgcttatcaataacat--aaatactttctttttggctaggat--ttgtttttagttgtcatcctggtactatgtta |
44682152 |
T |
|
| Q |
101 |
ttttgattcctatatattttcttaactatggttatctcttt |
141 |
Q |
| |
|
||||||| || | | ||||||||| ||||||||||||||| |
|
|
| T |
44682153 |
atttgatttctttgtgttttcttaaatatggttatctcttt |
44682193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 44653043 - 44653179
Alignment:
| Q |
1 |
aaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtcatcctggtgctatgtta |
100 |
Q |
| |
|
||||||| | |||||||||||||||||||| |||| || | | ||||||||| | |||| ||||| || || |||| ||||||||||||||||||||| |
|
|
| T |
44653043 |
aaaccaagtgttcatgtcattccatgcttaccaataacat--aaatactttctttttggctaggat--ttgtttttagttgtcatcctggtgctatgtta |
44653138 |
T |
|
| Q |
101 |
ttttgattcctatatattttcttaactatggttatctcttt |
141 |
Q |
| |
|
|||||||||| | | ||||||||| ||||||||||||||| |
|
|
| T |
44653139 |
atttgattcctttgtgttttcttaaatatggttatctcttt |
44653179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 17531232 - 17531140
Alignment:
| Q |
196 |
tttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgc |
288 |
Q |
| |
|
||||||||| |||| || ||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| | ||||||||||| |
|
|
| T |
17531232 |
tttttccattgaattaaggttgactggtttaatatttatttgcttgcaggataatgtatttgtcaatattgttccttctctgcaataccgtgc |
17531140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University