View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_high_12 (Length: 291)
Name: NF15748_high_12
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 2490446 - 2490708
Alignment:
| Q |
11 |
cagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagt |
110 |
Q |
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| T |
2490446 |
cagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagt |
2490545 |
T |
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| Q |
111 |
gatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtct |
210 |
Q |
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| T |
2490546 |
gatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtct |
2490645 |
T |
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| Q |
211 |
taatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatag |
273 |
Q |
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| T |
2490646 |
taatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatag |
2490708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
82 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
122 |
Q |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
82 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
122 |
Q |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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