View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15748_high_16 (Length: 239)

Name: NF15748_high_16
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15748_high_16
NF15748_high_16
[»] chr4 (1 HSPs)
chr4 (4-239)||(17656148-17656383)
[»] chr2 (4 HSPs)
chr2 (4-239)||(37045638-37045873)
chr2 (4-239)||(37036298-37036533)
chr2 (4-207)||(37011608-37011811)
chr2 (9-163)||(37027703-37027857)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 17656383 - 17656148
Alignment:
Q  4 aatatctaaaaggagccctaatttgcacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagattag 103  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17656383 aatatctaaaaggagccctaatttgtacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagattag 17656284  T
Q  104 aggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatggataatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctggt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17656283 aggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatgggtaatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctggt 17656184  T
Q  204 tctaactcatcgtctgctgttgtcacaaataaatcc 239  Q
    ||||||||||||||||||||||||||||||||||||    
T  17656183 tctaactcatcgtctgctgttgtcacaaataaatcc 17656148  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 37045638 - 37045873
Alignment:
Q  4 aatatctaaaaggagccctaatttgcacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagattag 103  Q
    ||||||||||||| || |||| ||| ||||| ||||| ||||| || || ||||||   || |||||||| |||||||    |||| |||||||| | |     
T  37045638 aatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaa 37045737  T
Q  104 aggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatggataatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctggt 203  Q
    |  |||||| |||||||||||||| |||||||||||||| | || ||||||||||||||| ||||| || ||||||||||| | ||||||||||| ||||    
T  37045738 aacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggt 37045837  T
Q  204 tctaactcatcgtctgctgttgtcacaaataaatcc 239  Q
    || |   ||   ||||||||||||||||| ||||||    
T  37045838 tcaagtacaggatctgctgttgtcacaaacaaatcc 37045873  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 37036298 - 37036533
Alignment:
Q  4 aatatctaaaaggagccctaatttgcacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagattag 103  Q
    ||||||||||||| || |||| ||| | ||| ||||| ||||| || |||||||||   || |||||||| |||||||    |||| |||||||| | |     
T  37036298 aatatctaaaaggtgctctaacttgtatattatacttcttacagaaaggtacccaaaacttggcaaatttagaagcttccaaaagaccatagaaggtaaa 37036397  T
Q  104 aggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatggataatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctggt 203  Q
    |  |||||| |||||||||||||| |||||||||||||| | || |||||||||||| || ||||| || ||||||||||| | ||||||||||| ||||    
T  37036398 aacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagagccaatagagacaaaacagtgttcaatgtgatgattggtggt 37036497  T
Q  204 tctaactcatcgtctgctgttgtcacaaataaatcc 239  Q
    || |   ||   ||||||||||||||||| ||||||    
T  37036498 tcaagtacaggatctgctgttgtcacaaacaaatcc 37036533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 37011608 - 37011811
Alignment:
Q  4 aatatctaaaaggagccctaatttgcacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagattag 103  Q
    |||||||||| || || |||  ||| ||||||||||| ||||||||||||||||||  ||  |||||||| | |||||    ||||||||||||| | ||    
T  37011608 aatatctaaatggtgctctacattgtacattgtacttcttacaaaatggtacccaaatttcagcaaatttggcagcttccacaagagcatagaaggtaag 37011707  T
Q  104 aggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatggataatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctggt 203  Q
    ||  ||||| |||||||||||||| |||||||||||||| | ||  |||||||||||||| || | |||||| || || || | |||||| |||| ||||    
T  37011708 agttgaacacccatcatcagaaacataacaagctagcttattagcaggataatcaagtgccaacaatgataacactgtattcactgtgattattggtggt 37011807  T
Q  204 tcta 207  Q
    ||||    
T  37011808 tcta 37011811  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 37027703 - 37027857
Alignment:
Q  9 ctaaaaggagccctaatttgcacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagattagaggag 108  Q
    |||||||| || |||| |||||||||||| || |||||||| ||||||||| | || |||||||| || ||||    ||| ||||| ||| | ||||| |    
T  37027703 ctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaaggtaagaggtg 37027802  T
Q  109 aacaaccatcatcagaaacgtaacaagctagcttgtgagatggataatcaagtgc 163  Q
    |||| |||||||||||||| || || ||||||||||  | |||||||||||||||    
T  37027803 aacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgc 37027857  T

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