View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_high_4 (Length: 422)
Name: NF15748_high_4
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 50072112 - 50072505
Alignment:
| Q |
18 |
aataattgcacacagggagatctgataa-gaagttatatatgattgactcagaaaatgtcatactcataccagtaagataataacatatgatccctaaca |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50072112 |
aataattgcacacagggagatctgataaagaagttatatatgattgactcagaaaatgtcatactcataccagtaagataataacatatgatccctaaca |
50072211 |
T |
|
| Q |
117 |
aaagccaaaatggtacagcatacctaaataaattccaacagaagtaaaaggtactatagtattgaaatttaatttcaacaaccaaataaatctaacgtga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50072212 |
aaagccaaaatggtacagcatacctaaataaattccaacagaagtaaaaggtactatagtattgaaatttaatttcaacaaccaaataaatctaacgtga |
50072311 |
T |
|
| Q |
217 |
acaacaattgccaactggctattacccgtaaattattaatgatctgctaaatccacatggcgtattaaaaactaaagaaagatatgtctcnnnnnnnaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50072312 |
acaacaattgccaactggctattacccgtaaattattaatgatctgctaaatccacatggcgtattaaaaactaaagaaagatatgtctctttttttaac |
50072411 |
T |
|
| Q |
317 |
ttcatgcatgtaaattgcaaaccctactgctactgcagaagtacaattatgaatcaacatcaaaattttagtattaaccatccttatgatcttc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50072412 |
ttcatgcatgtaaattgcaaaccctactgctactgcagaagtacaattatgaatcaacatcaaaattttagtattaaccatccttatgatcttc |
50072505 |
T |
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