View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_high_5 (Length: 416)
Name: NF15748_high_5
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 44845457 - 44845072
Alignment:
| Q |
12 |
tagcataggctgccatttgagtctgatccgaatactgaaccccacaaaacttgtctgaatcgttacatgttgtactgttgtcgcgacagacacaaccgca |
111 |
Q |
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| T |
44845457 |
tagcacaggctgccatttgagtctgatccgaatactgaaccccacaaagcttgtctgaatcgttacatgttgtactgttgtcgcgacagacacaaccgca |
44845358 |
T |
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| Q |
112 |
tttggattcgggttgagtcagttgatgattgaccaaactttgaagggaaataagcaagacagaaagaatcaatgggaacagaatcaacaagatgttggtc |
211 |
Q |
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| T |
44845357 |
tttggattcgggttgagtcagttgatgattgaccaaactttgaagggaaataagcaagacagaaagaatcaatgggaacagaatcaacaagatgttggtc |
44845258 |
T |
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| Q |
212 |
ttcacgttccgtttctgtataaccnnnnnnncgtgacatgcaagtaagttagataataatagtccgtaagacctaactcaaatgacaatgactatattgt |
311 |
Q |
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| T |
44845257 |
ttcacgttccgtttctgtataaccaaaaaaacgtgacatgcaagtaagttagataataatagtccgtaagacctaactcaaatgacaatgactatattgt |
44845158 |
T |
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| Q |
312 |
tagatcggacatttttaacccgattcaaactcaagacctaacaattgtgcgtgtgagtttgagtggtgcttgatactacttaagaa |
397 |
Q |
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| T |
44845157 |
tagatcggacatttttaacccgattcaaaatcaagacctaacaattgtgcgtgtgagtttgagtggtgcttgatactacttaagaa |
44845072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 44858410 - 44858354
Alignment:
| Q |
28 |
ttgagtctgatccgaatactgaaccccacaaaacttgtctgaatcgttacatgttgt |
84 |
Q |
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| T |
44858410 |
ttgattctgattagaatactggaccccacaaaccttctccgaatcgttacatgttgt |
44858354 |
T |
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