View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_low_1 (Length: 560)
Name: NF15748_low_1
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 22 - 533
Target Start/End: Complemental strand, 2468028 - 2467521
Alignment:
| Q |
22 |
atcatcagaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaa |
121 |
Q |
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| T |
2468028 |
atcatcagaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaa |
2467929 |
T |
|
| Q |
122 |
atgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgttgtagcccgaaaaatgttggtgaattgaaagcg |
221 |
Q |
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| T |
2467928 |
atgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgttgtagaccgaaaaatgttggtgaattgaaagcg |
2467829 |
T |
|
| Q |
222 |
tggtggtaatttgagattgcagcgaggagtaggaggggggaaaatggaagaggatataagtgaggtggtgaaagatgaaaagtgctggctcttaaatggt |
321 |
Q |
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| T |
2467828 |
tggtggtaatttgagattgcagcgaggagtaggagggggaaaaatggaagaggatataagtgaggtggtgaaagataaaaagtgctggctcttaaatggt |
2467729 |
T |
|
| Q |
322 |
tttggaaacgaatggagcgaatgtgagaaaaagtgtgattgcatttctaattccttcttctgcgttgcttcaactctgctatgctatgcttcgcagctcg |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2467728 |
tttggaaacgaatggagcgaatgtgagaaaaagtgtgattgcatttctaattccttcttctgcgttgcttcaactctgcta-----tgcttcgcagctcg |
2467634 |
T |
|
| Q |
422 |
ctctctgtttttctttttccaatttcttggataagtcccgcgtcacattaaccaaccacctcaccttgctttgttatctctttccctcctaaattaa-at |
520 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2467633 |
ctctctgtttttatttttccaatttcttggataagtcccgcgtcacattaaccaaccacctcaccttgctttgttatctctttccctcctaaattaacat |
2467534 |
T |
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| Q |
521 |
aacactcatcctt |
533 |
Q |
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||||||||||||| |
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| T |
2467533 |
aacactcatcctt |
2467521 |
T |
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